Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.58■□□□□ 0.57
SH3RF1Q7Z6J0 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 GPR53P-205ENST00000457298 1084 ntBASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 TP53TG3HP-202ENST00000569755 579 ntBASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SH3RF1Q7Z6J0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 REXO1L8P-201ENST00000604378 1897 ntBASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 AC024909.3-201ENST00000611513 2257 ntBASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SH3RF1Q7Z6J0 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 AC003101.2-201ENST00000612557 442 ntBASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 AC018529.1-201ENST00000613063 361 ntBASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SH3RF1Q7Z6J0 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 CICP6-201ENST00000457191 2729 ntBASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 AC016027.1-202ENST00000607927 1699 ntBASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 RNU1-129P-201ENST00000384064 167 ntBASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 U1.21-201ENST00000580816 167 ntBASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 AC020765.3-201ENST00000613051 740 ntBASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms