Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 AL627223.1-201ENST00000416693 442 ntBASIC19.65■□□□□ 0.74
VPS53Q5VIR6 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 SLC25A39P2-201ENST00000537614 270 ntBASIC19.65■□□□□ 0.74
VPS53Q5VIR6 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 GPALPP1-207ENST00000611650 899 ntBASIC19.65■□□□□ 0.74
VPS53Q5VIR6 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS53Q5VIR6 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS53Q5VIR6 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS53Q5VIR6 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
VPS53Q5VIR6 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS53Q5VIR6 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 GPS2P2-201ENST00000430745 888 ntBASIC19.64■□□□□ 0.73
VPS53Q5VIR6 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 AC084121.4-201ENST00000641598 221 ntBASIC19.64■□□□□ 0.73
VPS53Q5VIR6 AF228730.8-201ENST00000642140 221 ntBASIC19.64■□□□□ 0.73
VPS53Q5VIR6 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.64■□□□□ 0.73
VPS53Q5VIR6 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.64■□□□□ 0.73
VPS53Q5VIR6 AL365203.3-201ENST00000609742 2057 ntBASIC19.64■□□□□ 0.73
VPS53Q5VIR6 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS53Q5VIR6 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 UXT-AS1-201ENST00000590504 1525 ntBASIC19.63■□□□□ 0.73
VPS53Q5VIR6 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 AC004835.2-201ENST00000603762 682 ntBASIC19.63■□□□□ 0.73
VPS53Q5VIR6 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms