Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 AL359711.2-201ENST00000563105 872 ntBASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 AC080080.1-201ENST00000625121 2420 ntBASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 BAATP1-201ENST00000412284 1225 ntBASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 SLC25A24P2-201ENST00000415059 510 ntBASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 EEF1DP4-201ENST00000446006 880 ntBASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 AC097724.1-201ENST00000609581 426 ntBASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 AC005695.3-201ENST00000614522 232 ntBASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 RETN-203ENST00000629642 400 ntTSL 5 BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC88AQ3V6T2 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 TOMM22P5-201ENST00000416399 439 ntBASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 FAM86HP-204ENST00000513466 959 ntBASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 TIMM17BP1-201ENST00000545713 516 ntBASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC88AQ3V6T2 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 TARDBPP1-201ENST00000442013 1203 ntBASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 AC120045.2-201ENST00000567334 178 ntBASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 AC015967.2-201ENST00000624092 234 ntBASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 AC006435.4-201ENST00000625037 234 ntBASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 AL356737.1-201ENST00000634391 234 ntBASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC88AQ3V6T2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 806.9 ms