Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
LMO4P61968 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
LMO4P61968 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 OR8S1-201ENST00000310194 1080 ntBASIC13.26□□□□□ -0.29
LMO4P61968 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
LMO4P61968 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 AGGF1P2-201ENST00000426656 2106 ntBASIC13.26□□□□□ -0.29
LMO4P61968 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.26□□□□□ -0.29
LMO4P61968 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 INE1-201ENST00000456273 945 ntBASIC13.26□□□□□ -0.29
LMO4P61968 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 FADS2-205ENST00000517839 469 ntTSL 3 BASIC13.26□□□□□ -0.29
LMO4P61968 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 AC123567.1-201ENST00000548294 1261 ntBASIC13.26□□□□□ -0.29
LMO4P61968 BNIP3P1-202ENST00000550043 1585 ntBASIC13.26□□□□□ -0.29
LMO4P61968 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
LMO4P61968 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 IGHV3-72-202ENST00000621503 303 ntBASIC13.26□□□□□ -0.29
LMO4P61968 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.26□□□□□ -0.29
LMO4P61968 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
LMO4P61968 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LMO4P61968 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.25□□□□□ -0.29
LMO4P61968 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.25□□□□□ -0.29
LMO4P61968 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.25□□□□□ -0.29
LMO4P61968 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
LMO4P61968 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.25□□□□□ -0.29
LMO4P61968 AC098850.1-201ENST00000419919 790 ntBASIC13.25□□□□□ -0.29
LMO4P61968 ELK1P1-201ENST00000485699 580 ntBASIC13.25□□□□□ -0.29
LMO4P61968 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 AC011495.1-201ENST00000498085 584 ntBASIC13.25□□□□□ -0.29
LMO4P61968 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
LMO4P61968 RRP7BP-205ENST00000566851 833 ntBASIC13.25□□□□□ -0.29
LMO4P61968 AC093726.1-201ENST00000608064 963 ntBASIC13.25□□□□□ -0.29
LMO4P61968 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.25□□□□□ -0.29
LMO4P61968 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
LMO4P61968 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.25□□□□□ -0.29
LMO4P61968 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
LMO4P61968 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC13.25□□□□□ -0.29
LMO4P61968 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
LMO4P61968 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC13.25□□□□□ -0.29
LMO4P61968 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.25□□□□□ -0.29
LMO4P61968 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LMO4P61968 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.25□□□□□ -0.29
LMO4P61968 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LMO4P61968 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms