Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.02■□□□□ 0.16
PKNOX1P55347 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.02■□□□□ 0.16
PKNOX1P55347 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
PKNOX1P55347 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.02■□□□□ 0.16
PKNOX1P55347 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PKNOX1P55347 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PKNOX1P55347 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PKNOX1P55347 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
PKNOX1P55347 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
PKNOX1P55347 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.02■□□□□ 0.16
PKNOX1P55347 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.02■□□□□ 0.16
PKNOX1P55347 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 MIR648-201ENST00000385046 94 ntBASIC16.02■□□□□ 0.16
PKNOX1P55347 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.02■□□□□ 0.16
PKNOX1P55347 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PKNOX1P55347 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PKNOX1P55347 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PKNOX1P55347 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.02■□□□□ 0.16
PKNOX1P55347 ACTL9-202ENST00000612068 1252 ntBASIC16.02■□□□□ 0.16
PKNOX1P55347 AC004790.2-201ENST00000623588 572 ntBASIC16.02■□□□□ 0.16
PKNOX1P55347 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PKNOX1P55347 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PKNOX1P55347 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PKNOX1P55347 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
PKNOX1P55347 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
PKNOX1P55347 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PKNOX1P55347 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.02■□□□□ 0.15
PKNOX1P55347 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PKNOX1P55347 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
PKNOX1P55347 TNRC18P2-201ENST00000417666 2714 ntBASIC16.02■□□□□ 0.15
PKNOX1P55347 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
PKNOX1P55347 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.02■□□□□ 0.15
PKNOX1P55347 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.02■□□□□ 0.15
PKNOX1P55347 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 AL592424.1-201ENST00000563624 1536 ntBASIC16.01■□□□□ 0.15
PKNOX1P55347 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.01■□□□□ 0.15
PKNOX1P55347 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.01■□□□□ 0.15
PKNOX1P55347 AC012640.2-201ENST00000561606 901 ntBASIC16.01■□□□□ 0.15
PKNOX1P55347 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 MIR3909-201ENST00000579518 119 ntBASIC16.01■□□□□ 0.15
PKNOX1P55347 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.01■□□□□ 0.15
PKNOX1P55347 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
PKNOX1P55347 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
PKNOX1P55347 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.01■□□□□ 0.15
PKNOX1P55347 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PKNOX1P55347 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.01■□□□□ 0.15
PKNOX1P55347 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms