Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MBP-227ENST00000526111 581 ntTSL 4 BASIC22.2■■□□□ 1.14
MSH6P52701 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 HNRNPA1P48-202ENST00000565308 961 ntBASIC22.2■■□□□ 1.14
MSH6P52701 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC22.2■■□□□ 1.14
MSH6P52701 MIR3619-201ENST00000579667 83 ntBASIC22.2■■□□□ 1.14
MSH6P52701 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
MSH6P52701 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
MSH6P52701 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC22.2■■□□□ 1.14
MSH6P52701 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH6P52701 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH6P52701 PP12613-201ENST00000424958 2230 ntBASIC22.19■■□□□ 1.14
MSH6P52701 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC22.19■■□□□ 1.14
MSH6P52701 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
MSH6P52701 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH6P52701 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 AC020763.4-201ENST00000623414 4170 ntBASIC22.19■■□□□ 1.14
MSH6P52701 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
MSH6P52701 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 AC006001.1-201ENST00000325130 474 ntBASIC22.19■■□□□ 1.14
MSH6P52701 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH6P52701 CSH2-202ENST00000345366 598 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH6P52701 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH6P52701 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC22.19■■□□□ 1.14
MSH6P52701 RN7SL769P-201ENST00000469386 295 ntBASIC22.19■■□□□ 1.14
MSH6P52701 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH6P52701 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH6P52701 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC22.19■■□□□ 1.14
MSH6P52701 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC22.19■■□□□ 1.14
MSH6P52701 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC22.19■■□□□ 1.14
MSH6P52701 U82695.1-201ENST00000635752 1889 ntBASIC22.19■■□□□ 1.14
MSH6P52701 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
MSH6P52701 PCDHB17P-201ENST00000539533 2393 ntBASIC22.19■■□□□ 1.14
MSH6P52701 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
MSH6P52701 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH6P52701 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
MSH6P52701 GGT4P-201ENST00000623672 1708 ntBASIC22.19■■□□□ 1.14
MSH6P52701 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
MSH6P52701 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
MSH6P52701 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC22.18■■□□□ 1.14
MSH6P52701 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC22.18■■□□□ 1.14
MSH6P52701 AHCYP2-201ENST00000430630 1300 ntBASIC22.18■■□□□ 1.14
MSH6P52701 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
MSH6P52701 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC22.18■■□□□ 1.14
MSH6P52701 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC22.18■■□□□ 1.14
MSH6P52701 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC22.18■■□□□ 1.14
MSH6P52701 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC22.18■■□□□ 1.14
MSH6P52701 AC138951.2-201ENST00000623455 1161 ntBASIC22.18■■□□□ 1.14
MSH6P52701 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
MSH6P52701 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC22.18■■□□□ 1.14
MSH6P52701 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH6P52701 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC22.18■■□□□ 1.14
MSH6P52701 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH6P52701 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH6P52701 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
MSH6P52701 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 AC092053.1-201ENST00000605787 1936 ntBASIC22.17■■□□□ 1.14
MSH6P52701 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH6P52701 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 HNRNPA1P32-201ENST00000396326 963 ntBASIC22.17■■□□□ 1.14
MSH6P52701 AC104457.1-201ENST00000401024 814 ntBASIC22.17■■□□□ 1.14
MSH6P52701 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
MSH6P52701 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH6P52701 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH6P52701 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH6P52701 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC22.17■■□□□ 1.14
MSH6P52701 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms