Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CTCFP49711 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.74■□□□□ 0.59
CTCFP49711 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CTCFP49711 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 TSACC-208ENST00000481479 741 ntTSL 2 BASIC18.74■□□□□ 0.59
CTCFP49711 AC245884.6-201ENST00000515672 1067 ntBASIC18.74■□□□□ 0.59
CTCFP49711 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC18.74■□□□□ 0.59
CTCFP49711 KRT90P-201ENST00000549264 1064 ntBASIC18.74■□□□□ 0.59
CTCFP49711 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC18.74■□□□□ 0.59
CTCFP49711 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC18.74■□□□□ 0.59
CTCFP49711 AC097724.1-201ENST00000609581 426 ntBASIC18.74■□□□□ 0.59
CTCFP49711 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
CTCFP49711 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.74■□□□□ 0.59
CTCFP49711 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CTCFP49711 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CTCFP49711 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
CTCFP49711 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC18.73■□□□□ 0.59
CTCFP49711 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CTCFP49711 SNX21-203ENST00000372541 771 ntTSL 2 BASIC18.73■□□□□ 0.59
CTCFP49711 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC18.73■□□□□ 0.59
CTCFP49711 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.73■□□□□ 0.59
CTCFP49711 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC18.73■□□□□ 0.59
CTCFP49711 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.73■□□□□ 0.59
CTCFP49711 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC18.73■□□□□ 0.59
CTCFP49711 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC18.73■□□□□ 0.59
CTCFP49711 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 AC244669.2-201ENST00000612320 853 ntBASIC18.73■□□□□ 0.59
CTCFP49711 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.73■□□□□ 0.59
CTCFP49711 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.73■□□□□ 0.59
CTCFP49711 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CTCFP49711 CU633904.3-201ENST00000624042 1029 ntBASIC18.73■□□□□ 0.59
CTCFP49711 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.73■□□□□ 0.59
CTCFP49711 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.73■□□□□ 0.59
CTCFP49711 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.73■□□□□ 0.59
CTCFP49711 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CTCFP49711 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.73■□□□□ 0.59
CTCFP49711 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.73■□□□□ 0.59
CTCFP49711 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CTCFP49711 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CTCFP49711 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.73■□□□□ 0.59
CTCFP49711 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CTCFP49711 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.72■□□□□ 0.59
CTCFP49711 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.72■□□□□ 0.59
CTCFP49711 FTLP10-202ENST00000505798 471 ntBASIC18.72■□□□□ 0.59
CTCFP49711 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 AL359711.2-201ENST00000563105 872 ntBASIC18.72■□□□□ 0.59
CTCFP49711 EEF1DP1-201ENST00000585891 896 ntBASIC18.72■□□□□ 0.59
CTCFP49711 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
CTCFP49711 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC18.72■□□□□ 0.59
CTCFP49711 AC005695.3-201ENST00000614522 232 ntBASIC18.72■□□□□ 0.59
CTCFP49711 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CTCFP49711 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.71■□□□□ 0.59
CTCFP49711 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CTCFP49711 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms