Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
MSX2P35548 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
MSX2P35548 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
MSX2P35548 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MSX2P35548 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.59■□□□□ 0.09
MSX2P35548 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 FAM45BP-202ENST00000592932 1624 ntBASIC15.59■□□□□ 0.09
MSX2P35548 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
MSX2P35548 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.59■□□□□ 0.09
MSX2P35548 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.59■□□□□ 0.09
MSX2P35548 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 KRT17P6-201ENST00000453795 1220 ntBASIC15.59■□□□□ 0.09
MSX2P35548 BX005266.1-201ENST00000473402 457 ntBASIC15.59■□□□□ 0.09
MSX2P35548 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.59■□□□□ 0.09
MSX2P35548 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.59■□□□□ 0.09
MSX2P35548 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.59■□□□□ 0.09
MSX2P35548 AC010331.1-201ENST00000611423 582 ntBASIC15.59■□□□□ 0.09
MSX2P35548 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
MSX2P35548 REXO1L3P-201ENST00000622202 1288 ntBASIC15.59■□□□□ 0.09
MSX2P35548 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
MSX2P35548 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
MSX2P35548 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 KRT18P1-202ENST00000452408 1331 ntBASIC15.59■□□□□ 0.09
MSX2P35548 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.59■□□□□ 0.09
MSX2P35548 AC005622.1-201ENST00000636801 1703 ntBASIC15.59■□□□□ 0.09
MSX2P35548 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MSX2P35548 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MSX2P35548 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 NCF1C-201ENST00000438382 1427 ntBASIC15.59■□□□□ 0.09
MSX2P35548 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.59■□□□□ 0.09
MSX2P35548 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MSX2P35548 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MSX2P35548 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.09
MSX2P35548 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSX2P35548 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSX2P35548 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSX2P35548 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.58■□□□□ 0.09
MSX2P35548 AC126755.1-201ENST00000525846 6405 ntBASIC15.58■□□□□ 0.09
MSX2P35548 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
MSX2P35548 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MSX2P35548 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.58■□□□□ 0.08
MSX2P35548 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
MSX2P35548 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
MSX2P35548 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
MSX2P35548 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.58■□□□□ 0.08
MSX2P35548 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.58■□□□□ 0.08
MSX2P35548 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.58■□□□□ 0.08
MSX2P35548 ABCD1P5-201ENST00000445663 754 ntBASIC15.58■□□□□ 0.08
MSX2P35548 PAWRP1-201ENST00000451083 565 ntBASIC15.58■□□□□ 0.08
MSX2P35548 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.58■□□□□ 0.08
MSX2P35548 AC022616.7-201ENST00000525383 220 ntBASIC15.58■□□□□ 0.08
MSX2P35548 AL136038.3-201ENST00000561909 1096 ntBASIC15.58■□□□□ 0.08
MSX2P35548 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.58■□□□□ 0.08
MSX2P35548 Z69720.1-201ENST00000601483 472 ntBASIC15.58■□□□□ 0.08
MSX2P35548 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.58■□□□□ 0.08
MSX2P35548 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.08
MSX2P35548 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.08
MSX2P35548 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.58■□□□□ 0.08
MSX2P35548 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
MSX2P35548 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MSX2P35548 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
MSX2P35548 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MSX2P35548 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 TMBIM7P-203ENST00000641617 1718 ntBASIC15.57■□□□□ 0.08
MSX2P35548 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
MSX2P35548 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms