Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.25■□□□□ 0.51
CIITAP33076 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CIITAP33076 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CIITAP33076 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.25■□□□□ 0.51
CIITAP33076 AC087499.5-201ENST00000452760 1342 ntBASIC18.24■□□□□ 0.51
CIITAP33076 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CIITAP33076 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CIITAP33076 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.24■□□□□ 0.51
CIITAP33076 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CIITAP33076 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.24■□□□□ 0.51
CIITAP33076 PCDHB19P-201ENST00000570871 2371 ntBASIC18.24■□□□□ 0.51
CIITAP33076 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CIITAP33076 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CIITAP33076 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
CIITAP33076 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.24■□□□□ 0.51
CIITAP33076 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
CIITAP33076 BASP1P1-201ENST00000430708 665 ntBASIC18.24■□□□□ 0.51
CIITAP33076 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.24■□□□□ 0.51
CIITAP33076 HIST3H2BA-201ENST00000436555 524 ntBASIC18.24■□□□□ 0.51
CIITAP33076 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.24■□□□□ 0.51
CIITAP33076 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.24■□□□□ 0.51
CIITAP33076 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.24■□□□□ 0.51
CIITAP33076 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.24■□□□□ 0.51
CIITAP33076 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CIITAP33076 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
CIITAP33076 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CIITAP33076 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.23■□□□□ 0.51
CIITAP33076 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CIITAP33076 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.23■□□□□ 0.51
CIITAP33076 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.23■□□□□ 0.51
CIITAP33076 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.23■□□□□ 0.51
CIITAP33076 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 BNIP3P1-202ENST00000550043 1585 ntBASIC18.23■□□□□ 0.51
CIITAP33076 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CIITAP33076 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.23■□□□□ 0.51
CIITAP33076 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.23■□□□□ 0.51
CIITAP33076 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.23■□□□□ 0.51
CIITAP33076 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.23■□□□□ 0.51
CIITAP33076 RNA5SP421-201ENST00000516864 134 ntBASIC18.23■□□□□ 0.51
CIITAP33076 IGHV3-42-201ENST00000520410 361 ntBASIC18.23■□□□□ 0.51
CIITAP33076 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 SPCS2P1-201ENST00000561636 679 ntBASIC18.23■□□□□ 0.51
CIITAP33076 AL844908.2-201ENST00000609461 460 ntBASIC18.23■□□□□ 0.51
CIITAP33076 AL390754.1-201ENST00000619088 582 ntBASIC18.23■□□□□ 0.51
CIITAP33076 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.23■□□□□ 0.51
CIITAP33076 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CIITAP33076 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.23■□□□□ 0.51
CIITAP33076 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CIITAP33076 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CIITAP33076 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.22■□□□□ 0.51
CIITAP33076 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CIITAP33076 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CIITAP33076 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.22■□□□□ 0.51
CIITAP33076 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.22■□□□□ 0.51
CIITAP33076 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CIITAP33076 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CIITAP33076 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.22■□□□□ 0.51
CIITAP33076 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CIITAP33076 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.22■□□□□ 0.51
CIITAP33076 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CIITAP33076 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CIITAP33076 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CIITAP33076 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms