Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 AL592424.1-201ENST00000563624 1536 ntBASIC14.92□□□□□ -0.02
MSX1P28360 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX1P28360 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 INGX-202ENST00000489074 768 ntBASIC14.92□□□□□ -0.02
MSX1P28360 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.92□□□□□ -0.02
MSX1P28360 AC051619.7-201ENST00000568314 623 ntBASIC14.92□□□□□ -0.02
MSX1P28360 AP000842.3-202ENST00000569238 1080 ntBASIC14.92□□□□□ -0.02
MSX1P28360 AC024267.1-201ENST00000582320 895 ntBASIC14.92□□□□□ -0.02
MSX1P28360 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.92□□□□□ -0.02
MSX1P28360 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
MSX1P28360 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.92□□□□□ -0.02
MSX1P28360 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX1P28360 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.92□□□□□ -0.02
MSX1P28360 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 UXT-AS1-201ENST00000590504 1525 ntBASIC14.92□□□□□ -0.02
MSX1P28360 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 AL589702.1-201ENST00000641229 1509 ntBASIC14.92□□□□□ -0.02
MSX1P28360 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
MSX1P28360 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.92□□□□□ -0.02
MSX1P28360 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX1P28360 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX1P28360 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX1P28360 BASP1P1-201ENST00000430708 665 ntBASIC14.91□□□□□ -0.02
MSX1P28360 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.91□□□□□ -0.02
MSX1P28360 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX1P28360 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.91□□□□□ -0.02
MSX1P28360 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.91□□□□□ -0.02
MSX1P28360 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.91□□□□□ -0.02
MSX1P28360 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.91□□□□□ -0.02
MSX1P28360 RN7SL602P-201ENST00000578326 324 ntBASIC14.91□□□□□ -0.02
MSX1P28360 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
MSX1P28360 AP001059.3-201ENST00000619053 235 ntBASIC14.91□□□□□ -0.02
MSX1P28360 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 AC084018.2-201ENST00000613093 2607 ntBASIC14.91□□□□□ -0.02
MSX1P28360 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.91□□□□□ -0.02
MSX1P28360 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
MSX1P28360 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.91□□□□□ -0.02
MSX1P28360 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX1P28360 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX1P28360 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.9□□□□□ -0.02
MSX1P28360 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MSX1P28360 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
MSX1P28360 MTHFR-217ENST00000641820 1569 ntBASIC14.9□□□□□ -0.02
MSX1P28360 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms