Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.7■□□□□ 0.58
COL2A1P02458 AC068587.3-201ENST00000526613 355 ntBASIC18.7■□□□□ 0.58
COL2A1P02458 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
COL2A1P02458 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.7■□□□□ 0.58
COL2A1P02458 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.7■□□□□ 0.58
COL2A1P02458 BTNL10-201ENST00000595971 695 ntBASIC18.7■□□□□ 0.58
COL2A1P02458 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL2A1P02458 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL2A1P02458 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL2A1P02458 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 AC011477.6-201ENST00000604980 1927 ntBASIC18.69■□□□□ 0.58
COL2A1P02458 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL2A1P02458 AC134915.1-201ENST00000426461 574 ntBASIC18.69■□□□□ 0.58
COL2A1P02458 CROCCP4-201ENST00000457096 498 ntBASIC18.69■□□□□ 0.58
COL2A1P02458 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL2A1P02458 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.69■□□□□ 0.58
COL2A1P02458 MIR4259-201ENST00000584466 101 ntBASIC18.69■□□□□ 0.58
COL2A1P02458 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.69■□□□□ 0.58
COL2A1P02458 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 AC022211.2-201ENST00000585075 2527 ntBASIC18.69■□□□□ 0.58
COL2A1P02458 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC18.69■□□□□ 0.58
COL2A1P02458 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL2A1P02458 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.69■□□□□ 0.58
COL2A1P02458 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
COL2A1P02458 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL2A1P02458 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.68■□□□□ 0.58
COL2A1P02458 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.68■□□□□ 0.58
COL2A1P02458 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.68■□□□□ 0.58
COL2A1P02458 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.68■□□□□ 0.58
COL2A1P02458 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.68■□□□□ 0.58
COL2A1P02458 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.68■□□□□ 0.58
COL2A1P02458 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC18.68■□□□□ 0.58
COL2A1P02458 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.68■□□□□ 0.58
COL2A1P02458 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL2A1P02458 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
COL2A1P02458 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
COL2A1P02458 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL2A1P02458 AC092171.3-201ENST00000610122 2651 ntBASIC18.68■□□□□ 0.58
COL2A1P02458 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL2A1P02458 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
COL2A1P02458 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.67■□□□□ 0.58
COL2A1P02458 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
COL2A1P02458 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL2A1P02458 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.67■□□□□ 0.58
COL2A1P02458 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 VDAC1P7-201ENST00000462417 847 ntBASIC18.67■□□□□ 0.58
COL2A1P02458 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL2A1P02458 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms