Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.46■□□□□ 0.87
NPHP1O15259 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.46■□□□□ 0.87
NPHP1O15259 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC20.46■□□□□ 0.87
NPHP1O15259 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC20.46■□□□□ 0.87
NPHP1O15259 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.46■□□□□ 0.87
NPHP1O15259 AC123567.1-201ENST00000548294 1261 ntBASIC20.46■□□□□ 0.87
NPHP1O15259 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC20.46■□□□□ 0.87
NPHP1O15259 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
NPHP1O15259 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.46■□□□□ 0.87
NPHP1O15259 AC020765.3-201ENST00000613051 740 ntBASIC20.46■□□□□ 0.87
NPHP1O15259 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.46■□□□□ 0.87
NPHP1O15259 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 AL589702.1-201ENST00000641229 1509 ntBASIC20.46■□□□□ 0.87
NPHP1O15259 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
NPHP1O15259 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
NPHP1O15259 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
NPHP1O15259 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC20.45■□□□□ 0.86
NPHP1O15259 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.45■□□□□ 0.86
NPHP1O15259 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.45■□□□□ 0.86
NPHP1O15259 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC20.45■□□□□ 0.86
NPHP1O15259 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
NPHP1O15259 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.45■□□□□ 0.86
NPHP1O15259 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC20.45■□□□□ 0.86
NPHP1O15259 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.45■□□□□ 0.86
NPHP1O15259 AC234783.1-201ENST00000441761 496 ntBASIC20.45■□□□□ 0.86
NPHP1O15259 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 RN7SL837P-201ENST00000463010 287 ntBASIC20.45■□□□□ 0.86
NPHP1O15259 AC022494.1-201ENST00000466044 728 ntBASIC20.45■□□□□ 0.86
NPHP1O15259 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.45■□□□□ 0.86
NPHP1O15259 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.45■□□□□ 0.86
NPHP1O15259 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
NPHP1O15259 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC20.45■□□□□ 0.86
NPHP1O15259 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
NPHP1O15259 AL391256.1-201ENST00000443260 1855 ntBASIC20.45■□□□□ 0.86
NPHP1O15259 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.45■□□□□ 0.86
NPHP1O15259 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP1O15259 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.45■□□□□ 0.86
NPHP1O15259 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.44■□□□□ 0.86
NPHP1O15259 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.44■□□□□ 0.86
NPHP1O15259 SNX33P1-201ENST00000592116 1762 ntBASIC20.44■□□□□ 0.86
NPHP1O15259 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.44■□□□□ 0.86
NPHP1O15259 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
NPHP1O15259 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.44■□□□□ 0.86
NPHP1O15259 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.44■□□□□ 0.86
NPHP1O15259 AC023310.3-201ENST00000557027 670 ntBASIC20.44■□□□□ 0.86
NPHP1O15259 AC100756.1-201ENST00000562736 682 ntBASIC20.44■□□□□ 0.86
NPHP1O15259 AC138749.3-201ENST00000567691 622 ntBASIC20.44■□□□□ 0.86
NPHP1O15259 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 AC116165.1-201ENST00000611806 668 ntBASIC20.44■□□□□ 0.86
NPHP1O15259 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
NPHP1O15259 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP1O15259 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
NPHP1O15259 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms