Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.7■□□□□ 0.1
SLC28A1O00337 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.7■□□□□ 0.1
SLC28A1O00337 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SLC28A1O00337 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.7■□□□□ 0.1
SLC28A1O00337 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.7■□□□□ 0.1
SLC28A1O00337 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.7■□□□□ 0.1
SLC28A1O00337 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.7■□□□□ 0.1
SLC28A1O00337 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 RNA5SP415-201ENST00000517246 115 ntBASIC15.7■□□□□ 0.1
SLC28A1O00337 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SLC28A1O00337 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.7■□□□□ 0.1
SLC28A1O00337 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.7■□□□□ 0.1
SLC28A1O00337 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
SLC28A1O00337 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 AC104692.2-201ENST00000603054 253 ntBASIC15.7■□□□□ 0.1
SLC28A1O00337 AC023141.13-201ENST00000604991 943 ntBASIC15.7■□□□□ 0.1
SLC28A1O00337 AC010507.1-201ENST00000633895 436 ntBASIC15.7■□□□□ 0.1
SLC28A1O00337 NORAD-201ENST00000565493 5339 ntBASIC15.7■□□□□ 0.1
SLC28A1O00337 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SLC28A1O00337 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SLC28A1O00337 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.7■□□□□ 0.1
SLC28A1O00337 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A1O00337 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.7■□□□□ 0.1
SLC28A1O00337 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SLC28A1O00337 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SLC28A1O00337 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
SLC28A1O00337 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SLC28A1O00337 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.7■□□□□ 0.1
SLC28A1O00337 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.7■□□□□ 0.1
SLC28A1O00337 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.69■□□□□ 0.1
SLC28A1O00337 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
SLC28A1O00337 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SLC28A1O00337 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.69■□□□□ 0.1
SLC28A1O00337 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.69■□□□□ 0.1
SLC28A1O00337 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.69■□□□□ 0.1
SLC28A1O00337 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 AL450487.1-201ENST00000426799 995 ntBASIC15.69■□□□□ 0.1
SLC28A1O00337 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SLC28A1O00337 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.69■□□□□ 0.1
SLC28A1O00337 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.69■□□□□ 0.1
SLC28A1O00337 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.69■□□□□ 0.1
SLC28A1O00337 AP001005.1-201ENST00000571755 1248 ntBASIC15.69■□□□□ 0.1
SLC28A1O00337 AL078644.1-201ENST00000609881 752 ntBASIC15.69■□□□□ 0.1
SLC28A1O00337 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.69■□□□□ 0.1
SLC28A1O00337 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.69■□□□□ 0.1
SLC28A1O00337 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SLC28A1O00337 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SLC28A1O00337 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 MST1L-201ENST00000442552 2185 ntBASIC15.69■□□□□ 0.1
SLC28A1O00337 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SLC28A1O00337 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.69■□□□□ 0.1
SLC28A1O00337 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SLC28A1O00337 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.68■□□□□ 0.1
SLC28A1O00337 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.68■□□□□ 0.1
SLC28A1O00337 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
SLC28A1O00337 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SLC28A1O00337 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 TSPY26P-202ENST00000565928 3884 ntBASIC15.68■□□□□ 0.1
SLC28A1O00337 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SLC28A1O00337 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SLC28A1O00337 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.68■□□□□ 0.1
SLC28A1O00337 AC016027.1-202ENST00000607927 1699 ntBASIC15.68■□□□□ 0.1
SLC28A1O00337 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
SLC28A1O00337 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms