Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 AP001282.1-201ENST00000531301 1499 ntBASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 SUPT20HL2-201ENST00000486479 2409 ntBASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 MIR661-201ENST00000384842 89 ntBASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 IGHV3-42-201ENST00000520410 361 ntBASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 AC243562.2-201ENST00000561247 970 ntBASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 AC010491.1-201ENST00000563101 2797 ntBASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 AC087499.5-201ENST00000452760 1342 ntBASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM35Q9UPQ4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 LINC02447-202ENST00000501888 2146 ntBASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 AZGP1P1-201ENST00000411909 902 ntBASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 RN7SL602P-201ENST00000578326 324 ntBASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 KRT8P37-201ENST00000451609 1420 ntBASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM35Q9UPQ4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC21.02■□□□□ 0.95
TRIM35Q9UPQ4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRIM35Q9UPQ4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.02■□□□□ 0.95
TRIM35Q9UPQ4 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
TRIM35Q9UPQ4 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRIM35Q9UPQ4 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 AC018892.3-201ENST00000623986 2499 ntBASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM35Q9UPQ4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms