Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 AC126177.1-201ENST00000547829 2218 ntBASIC14.29□□□□□ -0.12
NKX3-1Q99801 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 FGFR3P6-201ENST00000457012 610 ntBASIC14.29□□□□□ -0.12
NKX3-1Q99801 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 AC107918.2-201ENST00000530817 355 ntBASIC14.29□□□□□ -0.12
NKX3-1Q99801 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 AC008608.2-201ENST00000606089 416 ntBASIC14.29□□□□□ -0.12
NKX3-1Q99801 AL589182.2-201ENST00000619332 1049 ntBASIC14.29□□□□□ -0.12
NKX3-1Q99801 AC004706.3-202ENST00000621574 984 ntBASIC14.29□□□□□ -0.12
NKX3-1Q99801 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 AP005117.1-202ENST00000581724 1908 ntBASIC14.29□□□□□ -0.12
NKX3-1Q99801 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX3-1Q99801 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.29□□□□□ -0.12
NKX3-1Q99801 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC14.28□□□□□ -0.12
NKX3-1Q99801 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 AC139887.3-201ENST00000568585 713 ntBASIC14.28□□□□□ -0.12
NKX3-1Q99801 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.28□□□□□ -0.12
NKX3-1Q99801 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 AL031008.1-201ENST00000619963 541 ntBASIC14.28□□□□□ -0.12
NKX3-1Q99801 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.28□□□□□ -0.12
NKX3-1Q99801 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX3-1Q99801 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 AC112504.1-201ENST00000623415 1841 ntBASIC14.27□□□□□ -0.12
NKX3-1Q99801 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms