Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC025678.2-201ENST00000562061 970 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TSSK5P-201ENST00000423978 907 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CD7-202ENST00000578509 925 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AC005237.2-201ENST00000434368 219 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AC004890.2-204ENST00000481968 304 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 GATB-205ENST00000508611 605 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AC010336.2-201ENST00000564226 506 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 WT1-209ENST00000530998 2421 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 U91328.1-201ENST00000437528 223 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MIR6799-201ENST00000620297 69 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 TMPO-212ENST00000556029 4242 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AL671710.1-201ENST00000610245 2349 ntBASIC5.07□□□□□ -1.6
SYNE1Q8NF91 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 NAA50-208ENST00000497255 789 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MMP17-203ENST00000535004 719 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 CD81-202ENST00000381036 880 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SYNE1Q8NF91 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms