Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 HLA-A-201ENST00000376802 1334 ntBASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 AL590627.1-203ENST00000421194 1026 ntBASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 SIGLEC30P-201ENST00000455569 941 ntBASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 TP73-AS1-207ENST00000624167 988 ntBASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.27■□□□□ 0.04
DEPDC4Q8N2C3 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 AC097637.2-201ENST00000624096 1997 ntBASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
DEPDC4Q8N2C3 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 AP000347.1-202ENST00000435868 847 ntBASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 AC144831.1-201ENST00000573312 2656 ntBASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.26■□□□□ 0.03
DEPDC4Q8N2C3 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms