Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SF3A1Q15459 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
SF3A1Q15459 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
SF3A1Q15459 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SF3A1Q15459 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.89■□□□□ 0.61
SF3A1Q15459 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SF3A1Q15459 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SF3A1Q15459 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.88■□□□□ 0.61
SF3A1Q15459 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 AC105917.1-201ENST00000506637 2539 ntBASIC18.88■□□□□ 0.61
SF3A1Q15459 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SF3A1Q15459 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SF3A1Q15459 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.88■□□□□ 0.61
SF3A1Q15459 AL662844.1-201ENST00000546340 181 ntBASIC18.88■□□□□ 0.61
SF3A1Q15459 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.88■□□□□ 0.61
SF3A1Q15459 AL031432.2-201ENST00000566714 459 ntBASIC18.88■□□□□ 0.61
SF3A1Q15459 AL928711.1-201ENST00000570165 459 ntBASIC18.88■□□□□ 0.61
SF3A1Q15459 AL031055.1-201ENST00000606362 631 ntBASIC18.88■□□□□ 0.61
SF3A1Q15459 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.88■□□□□ 0.61
SF3A1Q15459 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SF3A1Q15459 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.88■□□□□ 0.61
SF3A1Q15459 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
SF3A1Q15459 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.88■□□□□ 0.61
SF3A1Q15459 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SF3A1Q15459 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.87■□□□□ 0.61
SF3A1Q15459 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.87■□□□□ 0.61
SF3A1Q15459 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.87■□□□□ 0.61
SF3A1Q15459 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SF3A1Q15459 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.87■□□□□ 0.61
SF3A1Q15459 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.87■□□□□ 0.61
SF3A1Q15459 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SF3A1Q15459 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SF3A1Q15459 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.87■□□□□ 0.61
SF3A1Q15459 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.87■□□□□ 0.61
SF3A1Q15459 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SF3A1Q15459 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.87■□□□□ 0.61
SF3A1Q15459 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
SF3A1Q15459 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.87■□□□□ 0.61
SF3A1Q15459 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.87■□□□□ 0.61
SF3A1Q15459 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SF3A1Q15459 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 AL121894.2-201ENST00000602977 491 ntBASIC18.87■□□□□ 0.61
SF3A1Q15459 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.87■□□□□ 0.61
SF3A1Q15459 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SF3A1Q15459 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.87■□□□□ 0.61
SF3A1Q15459 AC010507.1-201ENST00000633895 436 ntBASIC18.87■□□□□ 0.61
SF3A1Q15459 AL645728.2-201ENST00000641974 660 ntBASIC18.87■□□□□ 0.61
SF3A1Q15459 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC18.87■□□□□ 0.61
SF3A1Q15459 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SF3A1Q15459 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SF3A1Q15459 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SF3A1Q15459 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SF3A1Q15459 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.86■□□□□ 0.61
SF3A1Q15459 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.86■□□□□ 0.61
SF3A1Q15459 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SF3A1Q15459 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SF3A1Q15459 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC18.86■□□□□ 0.61
SF3A1Q15459 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SF3A1Q15459 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SF3A1Q15459 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SF3A1Q15459 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SF3A1Q15459 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SF3A1Q15459 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SF3A1Q15459 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SF3A1Q15459 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms