Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SAMD11P1-201ENST00000571429 661 ntBASIC11.48□□□□□ -0.57
PRKDCP78527 PPY2P-201ENST00000582808 702 ntBASIC11.48□□□□□ -0.57
PRKDCP78527 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 UBL5-208ENST00000593087 320 ntTSL 3 BASIC11.48□□□□□ -0.57
PRKDCP78527 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC11.48□□□□□ -0.57
PRKDCP78527 AC007881.3-201ENST00000608897 607 ntBASIC11.48□□□□□ -0.57
PRKDCP78527 ZBTB45P2-201ENST00000452245 1531 ntBASIC11.48□□□□□ -0.57
PRKDCP78527 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
PRKDCP78527 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
PRKDCP78527 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC11.47□□□□□ -0.57
PRKDCP78527 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC11.47□□□□□ -0.57
PRKDCP78527 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC11.47□□□□□ -0.57
PRKDCP78527 AC103988.2-201ENST00000561804 725 ntBASIC11.47□□□□□ -0.57
PRKDCP78527 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC11.47□□□□□ -0.57
PRKDCP78527 AC093813.1-201ENST00000605066 256 ntBASIC11.47□□□□□ -0.57
PRKDCP78527 ETV2-207ENST00000619399 994 ntTSL 5 BASIC11.47□□□□□ -0.57
PRKDCP78527 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC11.47□□□□□ -0.57
PRKDCP78527 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC11.47□□□□□ -0.57
PRKDCP78527 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 AC079178.1-201ENST00000420915 656 ntBASIC11.47□□□□□ -0.57
PRKDCP78527 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC11.47□□□□□ -0.57
PRKDCP78527 AC078991.1-201ENST00000437297 610 ntBASIC11.47□□□□□ -0.57
PRKDCP78527 POU5F1P6-201ENST00000466990 990 ntBASIC11.47□□□□□ -0.57
PRKDCP78527 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC11.47□□□□□ -0.57
PRKDCP78527 FTLP5-201ENST00000586853 534 ntBASIC11.47□□□□□ -0.57
PRKDCP78527 MME-218ENST00000625667 363 ntTSL 5 BASIC11.47□□□□□ -0.57
PRKDCP78527 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC11.47□□□□□ -0.57
PRKDCP78527 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC11.47□□□□□ -0.57
PRKDCP78527 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC11.47□□□□□ -0.57
PRKDCP78527 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC11.47□□□□□ -0.57
PRKDCP78527 AC100757.4-201ENST00000626934 759 ntBASIC11.47□□□□□ -0.57
PRKDCP78527 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
PRKDCP78527 TP73-209ENST00000603362 1668 ntTSL 5 BASIC11.47□□□□□ -0.57
PRKDCP78527 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
PRKDCP78527 FO393414.2-201ENST00000405153 598 ntBASIC11.46□□□□□ -0.57
PRKDCP78527 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC11.46□□□□□ -0.57
PRKDCP78527 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC11.46□□□□□ -0.57
PRKDCP78527 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.46□□□□□ -0.57
PRKDCP78527 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
PRKDCP78527 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC11.46□□□□□ -0.57
PRKDCP78527 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
PRKDCP78527 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
PRKDCP78527 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
PRKDCP78527 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 AC136604.1-201ENST00000418535 575 ntBASIC11.46□□□□□ -0.57
PRKDCP78527 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC11.46□□□□□ -0.57
PRKDCP78527 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC11.46□□□□□ -0.57
PRKDCP78527 NCK2-206ENST00000522586 490 ntTSL 5 BASIC11.46□□□□□ -0.57
PRKDCP78527 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 RNF146-211ENST00000609447 607 ntTSL 4 BASIC11.46□□□□□ -0.57
PRKDCP78527 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
PRKDCP78527 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
PRKDCP78527 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
PRKDCP78527 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
PRKDCP78527 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC11.46□□□□□ -0.57
PRKDCP78527 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
PRKDCP78527 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
PRKDCP78527 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
PRKDCP78527 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC11.46□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms