Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CXCL12P48061 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CXCL12P48061 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 GOLGA2P4-201ENST00000441462 777 ntBASIC16.06■□□□□ 0.16
CXCL12P48061 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.06■□□□□ 0.16
CXCL12P48061 AC243960.2-201ENST00000600996 747 ntBASIC16.06■□□□□ 0.16
CXCL12P48061 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CXCL12P48061 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.06■□□□□ 0.16
CXCL12P48061 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CXCL12P48061 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CXCL12P48061 AL691432.1-201ENST00000596308 1422 ntBASIC16.05■□□□□ 0.16
CXCL12P48061 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CXCL12P48061 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 BAATP1-201ENST00000412284 1225 ntBASIC16.05■□□□□ 0.16
CXCL12P48061 GPAA1P2-201ENST00000417923 928 ntBASIC16.05■□□□□ 0.16
CXCL12P48061 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL12P48061 AC016694.1-201ENST00000434179 700 ntBASIC16.05■□□□□ 0.16
CXCL12P48061 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.05■□□□□ 0.16
CXCL12P48061 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
CXCL12P48061 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.05■□□□□ 0.16
CXCL12P48061 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CXCL12P48061 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.05■□□□□ 0.16
CXCL12P48061 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.05■□□□□ 0.16
CXCL12P48061 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.05■□□□□ 0.16
CXCL12P48061 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.05■□□□□ 0.16
CXCL12P48061 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CXCL12P48061 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL12P48061 AL139099.5-201ENST00000635274 300 ntBASIC16.05■□□□□ 0.16
CXCL12P48061 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CXCL12P48061 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CXCL12P48061 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
CXCL12P48061 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CXCL12P48061 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.05■□□□□ 0.16
CXCL12P48061 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CXCL12P48061 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CXCL12P48061 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.05■□□□□ 0.16
CXCL12P48061 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CXCL12P48061 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL12P48061 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL12P48061 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CXCL12P48061 INTS4P2-202ENST00000614726 2019 ntBASIC16.04■□□□□ 0.16
CXCL12P48061 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.04■□□□□ 0.16
CXCL12P48061 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CXCL12P48061 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL12P48061 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CXCL12P48061 MIR1247-201ENST00000408206 136 ntBASIC16.04■□□□□ 0.16
CXCL12P48061 AZGP1P1-201ENST00000411909 902 ntBASIC16.04■□□□□ 0.16
CXCL12P48061 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC16.04■□□□□ 0.16
CXCL12P48061 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL12P48061 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.04■□□□□ 0.16
CXCL12P48061 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.04■□□□□ 0.16
CXCL12P48061 FTH1P14-201ENST00000482930 551 ntBASIC16.04■□□□□ 0.16
CXCL12P48061 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.04■□□□□ 0.16
CXCL12P48061 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL12P48061 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.04■□□□□ 0.16
CXCL12P48061 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.04■□□□□ 0.16
CXCL12P48061 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.04■□□□□ 0.16
CXCL12P48061 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL12P48061 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CXCL12P48061 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.04■□□□□ 0.16
CXCL12P48061 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms