Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN4AP35499 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.86■□□□□ 0.61
SCN4AP35499 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.86■□□□□ 0.61
SCN4AP35499 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC18.86■□□□□ 0.61
SCN4AP35499 AC026740.1-201ENST00000607068 791 ntBASIC18.86■□□□□ 0.61
SCN4AP35499 AC079336.7-201ENST00000623428 1078 ntBASIC18.86■□□□□ 0.61
SCN4AP35499 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SCN4AP35499 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.85■□□□□ 0.61
SCN4AP35499 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC18.85■□□□□ 0.61
SCN4AP35499 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC18.85■□□□□ 0.61
SCN4AP35499 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 MIR3907-201ENST00000579424 151 ntBASIC18.85■□□□□ 0.61
SCN4AP35499 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC18.85■□□□□ 0.61
SCN4AP35499 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.85■□□□□ 0.61
SCN4AP35499 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.85■□□□□ 0.61
SCN4AP35499 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN4AP35499 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN4AP35499 CROCCP2-202ENST00000412962 2773 ntBASIC18.85■□□□□ 0.61
SCN4AP35499 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SCN4AP35499 AL354989.2-201ENST00000435838 1540 ntBASIC18.84■□□□□ 0.61
SCN4AP35499 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.84■□□□□ 0.61
SCN4AP35499 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 SPTLC1P5-201ENST00000450718 252 ntBASIC18.84■□□□□ 0.61
SCN4AP35499 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN4AP35499 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.84■□□□□ 0.61
SCN4AP35499 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 AC132938.4-201ENST00000623835 848 ntBASIC18.84■□□□□ 0.61
SCN4AP35499 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN4AP35499 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.84■□□□□ 0.61
SCN4AP35499 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.84■□□□□ 0.61
SCN4AP35499 BNIP3P1-202ENST00000550043 1585 ntBASIC18.84■□□□□ 0.61
SCN4AP35499 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SCN4AP35499 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.84■□□□□ 0.61
SCN4AP35499 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
SCN4AP35499 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SCN4AP35499 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SCN4AP35499 RNU1-114P-201ENST00000365297 166 ntBASIC18.84■□□□□ 0.61
SCN4AP35499 AC134698.3-201ENST00000523880 214 ntBASIC18.84■□□□□ 0.61
SCN4AP35499 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC18.84■□□□□ 0.61
SCN4AP35499 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN4AP35499 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC18.84■□□□□ 0.61
SCN4AP35499 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SCN4AP35499 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.83■□□□□ 0.61
SCN4AP35499 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SCN4AP35499 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.83■□□□□ 0.61
SCN4AP35499 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
SCN4AP35499 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.83■□□□□ 0.6
SCN4AP35499 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN4AP35499 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN4AP35499 AC008764.6-201ENST00000595909 2069 ntBASIC18.83■□□□□ 0.6
SCN4AP35499 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN4AP35499 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
SCN4AP35499 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN4AP35499 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN4AP35499 NKAIN1P1-201ENST00000435754 582 ntBASIC18.83■□□□□ 0.6
SCN4AP35499 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.83■□□□□ 0.6
SCN4AP35499 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SCN4AP35499 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18.83■□□□□ 0.6
SCN4AP35499 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms