Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNA5SP486-201ENST00000515961 83 ntBASIC16.58■□□□□ 0.24
COL6A3P12111 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
COL6A3P12111 AC013355.1-201ENST00000562625 723 ntBASIC16.58■□□□□ 0.24
COL6A3P12111 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A3P12111 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
COL6A3P12111 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A3P12111 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A3P12111 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A3P12111 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
COL6A3P12111 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
COL6A3P12111 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A3P12111 AC010503.4-201ENST00000615487 688 ntBASIC16.58■□□□□ 0.24
COL6A3P12111 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
COL6A3P12111 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A3P12111 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 AC092068.3-201ENST00000587894 2016 ntBASIC16.57■□□□□ 0.24
COL6A3P12111 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A3P12111 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL6A3P12111 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A3P12111 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.57■□□□□ 0.24
COL6A3P12111 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A3P12111 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC16.57■□□□□ 0.24
COL6A3P12111 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.57■□□□□ 0.24
COL6A3P12111 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A3P12111 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.57■□□□□ 0.24
COL6A3P12111 AC006158.1-201ENST00000610661 249 ntBASIC16.57■□□□□ 0.24
COL6A3P12111 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL6A3P12111 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 CTSL-202ENST00000342020 933 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A3P12111 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A3P12111 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 AL353770.1-201ENST00000614915 403 ntBASIC16.57■□□□□ 0.24
COL6A3P12111 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.57■□□□□ 0.24
COL6A3P12111 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A3P12111 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A3P12111 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC16.57■□□□□ 0.24
COL6A3P12111 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.57■□□□□ 0.24
COL6A3P12111 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A3P12111 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A3P12111 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.57■□□□□ 0.24
COL6A3P12111 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.57■□□□□ 0.24
COL6A3P12111 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL6A3P12111 AC105137.3-201ENST00000617588 984 ntBASIC16.57■□□□□ 0.24
COL6A3P12111 AC244250.3-201ENST00000620749 366 ntBASIC16.57■□□□□ 0.24
COL6A3P12111 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A3P12111 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
COL6A3P12111 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A3P12111 AL021920.2-201ENST00000624828 1351 ntBASIC16.56■□□□□ 0.24
COL6A3P12111 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.56■□□□□ 0.24
COL6A3P12111 AL354989.2-201ENST00000435838 1540 ntBASIC16.56■□□□□ 0.24
COL6A3P12111 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A3P12111 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC16.56■□□□□ 0.24
COL6A3P12111 RBM8B-201ENST00000555532 525 ntBASIC16.56■□□□□ 0.24
COL6A3P12111 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.56■□□□□ 0.24
COL6A3P12111 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A3P12111 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A3P12111 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A3P12111 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A3P12111 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A3P12111 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A3P12111 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
COL6A3P12111 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.56■□□□□ 0.24
COL6A3P12111 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A3P12111 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A3P12111 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.56■□□□□ 0.24
COL6A3P12111 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A3P12111 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A3P12111 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.56■□□□□ 0.24
COL6A3P12111 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A3P12111 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A3P12111 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A3P12111 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL6A3P12111 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A3P12111 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A3P12111 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
COL6A3P12111 RPS9P1-201ENST00000419943 583 ntBASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms