Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXD4P09016 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXD4P09016 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.84□□□□□ -0.03
HOXD4P09016 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
HOXD4P09016 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HOXD4P09016 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXD4P09016 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXD4P09016 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
HOXD4P09016 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.83□□□□□ -0.03
HOXD4P09016 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXD4P09016 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HOXD4P09016 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXD4P09016 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.83□□□□□ -0.03
HOXD4P09016 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.83□□□□□ -0.04
HOXD4P09016 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.83□□□□□ -0.04
HOXD4P09016 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.83□□□□□ -0.04
HOXD4P09016 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
HOXD4P09016 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HOXD4P09016 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.83□□□□□ -0.04
HOXD4P09016 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.83□□□□□ -0.04
HOXD4P09016 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.83□□□□□ -0.04
HOXD4P09016 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.83□□□□□ -0.04
HOXD4P09016 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 MIR6080-201ENST00000617359 66 ntBASIC14.83□□□□□ -0.04
HOXD4P09016 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.83□□□□□ -0.04
HOXD4P09016 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXD4P09016 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXD4P09016 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
HOXD4P09016 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 AC008677.1-201ENST00000519230 1561 ntBASIC14.82□□□□□ -0.04
HOXD4P09016 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.82□□□□□ -0.04
HOXD4P09016 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 AC005034.1-201ENST00000426657 489 ntBASIC14.82□□□□□ -0.04
HOXD4P09016 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.82□□□□□ -0.04
HOXD4P09016 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 TSPY16P-201ENST00000449843 468 ntBASIC14.82□□□□□ -0.04
HOXD4P09016 AL512638.1-201ENST00000457493 794 ntBASIC14.82□□□□□ -0.04
HOXD4P09016 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.82□□□□□ -0.04
HOXD4P09016 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.82□□□□□ -0.04
HOXD4P09016 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.82□□□□□ -0.04
HOXD4P09016 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms