Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRIM56Q9BRZ2 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 MRPL3P1-201ENST00000400109 1033 ntBASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 AL662844.1-201ENST00000546340 181 ntBASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 AC010654.1-201ENST00000615722 808 ntBASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 AC005593.1-201ENST00000624894 515 ntBASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM56Q9BRZ2 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
TRIM56Q9BRZ2 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
TRIM56Q9BRZ2 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 AP003680.1-201ENST00000598970 3660 ntBASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 PRAL-201ENST00000624952 3286 ntBASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 MRPL20P1-201ENST00000400819 433 ntBASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM56Q9BRZ2 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 HCG4-201ENST00000418983 998 ntBASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 AC098831.1-202ENST00000438821 336 ntBASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 RNA5SP419-201ENST00000515908 135 ntBASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.69■□□□□ 0.26
TRIM56Q9BRZ2 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms