Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC099063.4-201ENST00000641099 1602 ntBASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
DEPDC4Q8N2C3 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 AP005117.1-202ENST00000581724 1908 ntBASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 AC104581.4-201ENST00000623126 3052 ntBASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 MRPL3P1-201ENST00000400109 1033 ntBASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 FGFR3P6-201ENST00000457012 610 ntBASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 GPALPP1-207ENST00000611650 899 ntBASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
DEPDC4Q8N2C3 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 AL031284.1-201ENST00000419297 478 ntBASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
DEPDC4Q8N2C3 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms