Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.11■□□□□ 0.01
RNF4P78317 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNF4P78317 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
RNF4P78317 AC079328.2-201ENST00000561241 3354 ntBASIC15.1■□□□□ 0.01
RNF4P78317 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.1■□□□□ 0.01
RNF4P78317 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.1■□□□□ 0.01
RNF4P78317 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RNF4P78317 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.1■□□□□ 0.01
RNF4P78317 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
RNF4P78317 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.1■□□□□ 0.01
RNF4P78317 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
RNF4P78317 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
RNF4P78317 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.1■□□□□ 0.01
RNF4P78317 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RNF4P78317 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.1■□□□□ 0.01
RNF4P78317 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.1■□□□□ 0.01
RNF4P78317 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.1■□□□□ 0.01
RNF4P78317 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.1■□□□□ 0.01
RNF4P78317 AC061975.2-201ENST00000581722 295 ntBASIC15.1■□□□□ 0.01
RNF4P78317 AL365330.1-201ENST00000607459 531 ntBASIC15.1■□□□□ 0.01
RNF4P78317 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.1■□□□□ 0.01
RNF4P78317 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.1■□□□□ 0.01
RNF4P78317 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
RNF4P78317 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.1■□□□□ 0.01
RNF4P78317 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.1■□□□□ 0.01
RNF4P78317 AL592424.1-201ENST00000563624 1536 ntBASIC15.1■□□□□ 0.01
RNF4P78317 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RNF4P78317 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
RNF4P78317 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
RNF4P78317 REXO1L8P-201ENST00000604378 1897 ntBASIC15.1■□□□□ 0.01
RNF4P78317 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
RNF4P78317 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.09■□□□□ 0.01
RNF4P78317 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.09■□□□□ 0.01
RNF4P78317 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.09■□□□□ 0.01
RNF4P78317 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.09■□□□□ 0.01
RNF4P78317 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
RNF4P78317 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.09■□□□□ 0.01
RNF4P78317 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
RNF4P78317 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.09■□□□□ 0.01
RNF4P78317 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.09■□□□□ 0.01
RNF4P78317 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 AL353705.2-201ENST00000428243 662 ntBASIC15.09■□□□□ 0.01
RNF4P78317 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.09■□□□□ 0.01
RNF4P78317 KLF2P3-201ENST00000451977 1087 ntBASIC15.09■□□□□ 0.01
RNF4P78317 CYMP-203ENST00000474680 1263 ntBASIC15.09■□□□□ 0.01
RNF4P78317 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
RNF4P78317 AC051619.7-201ENST00000568314 623 ntBASIC15.09■□□□□ 0.01
RNF4P78317 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.09■□□□□ 0.01
RNF4P78317 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RNF4P78317 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
RNF4P78317 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.09■□□□□ 0.01
RNF4P78317 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
RNF4P78317 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.09■□□□□ 0.01
RNF4P78317 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RNF4P78317 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.09■□□□□ 0.01
RNF4P78317 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms