Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.16■□□□□ 0.34
BDNFP23560 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
BDNFP23560 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
BDNFP23560 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.16■□□□□ 0.34
BDNFP23560 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.16■□□□□ 0.34
BDNFP23560 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.16■□□□□ 0.34
BDNFP23560 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.16■□□□□ 0.34
BDNFP23560 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.16■□□□□ 0.34
BDNFP23560 HLA-V-204ENST00000476601 1289 ntBASIC17.16■□□□□ 0.34
BDNFP23560 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.16■□□□□ 0.34
BDNFP23560 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.16■□□□□ 0.34
BDNFP23560 MIR4321-201ENST00000592276 80 ntBASIC17.16■□□□□ 0.34
BDNFP23560 AL365330.1-201ENST00000607459 531 ntBASIC17.16■□□□□ 0.34
BDNFP23560 AJ011932.1-201ENST00000621707 465 ntBASIC17.16■□□□□ 0.34
BDNFP23560 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
BDNFP23560 TNRC18P3-201ENST00000441896 2691 ntBASIC17.16■□□□□ 0.34
BDNFP23560 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.16■□□□□ 0.34
BDNFP23560 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
BDNFP23560 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
BDNFP23560 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 AL592424.1-201ENST00000563624 1536 ntBASIC17.16■□□□□ 0.34
BDNFP23560 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
BDNFP23560 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
BDNFP23560 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.15■□□□□ 0.34
BDNFP23560 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.15■□□□□ 0.34
BDNFP23560 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
BDNFP23560 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.15■□□□□ 0.34
BDNFP23560 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
BDNFP23560 RPL37AP1-201ENST00000412502 279 ntBASIC17.15■□□□□ 0.34
BDNFP23560 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.15■□□□□ 0.34
BDNFP23560 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.15■□□□□ 0.34
BDNFP23560 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
BDNFP23560 UGT1A2P-201ENST00000454886 866 ntBASIC17.15■□□□□ 0.34
BDNFP23560 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.15■□□□□ 0.34
BDNFP23560 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
BDNFP23560 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.15■□□□□ 0.34
BDNFP23560 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
BDNFP23560 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.15■□□□□ 0.34
BDNFP23560 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BDNFP23560 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
BDNFP23560 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.15■□□□□ 0.34
BDNFP23560 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
BDNFP23560 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
BDNFP23560 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.14■□□□□ 0.33
BDNFP23560 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.14■□□□□ 0.33
BDNFP23560 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.14■□□□□ 0.33
BDNFP23560 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.14■□□□□ 0.33
BDNFP23560 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.14■□□□□ 0.33
BDNFP23560 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.14■□□□□ 0.33
BDNFP23560 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.14■□□□□ 0.33
BDNFP23560 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.14■□□□□ 0.33
BDNFP23560 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.14■□□□□ 0.33
BDNFP23560 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.14■□□□□ 0.33
BDNFP23560 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
BDNFP23560 AL079307.3-201ENST00000556114 283 ntBASIC17.14■□□□□ 0.33
BDNFP23560 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.14■□□□□ 0.33
BDNFP23560 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
BDNFP23560 TEX28P1-201ENST00000613479 1221 ntBASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms