Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
VPS4BO75351 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
VPS4BO75351 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS4BO75351 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4BO75351 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4BO75351 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
VPS4BO75351 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4BO75351 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4BO75351 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4BO75351 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS4BO75351 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS4BO75351 AC136632.2-201ENST00000512891 861 ntBASIC16.06■□□□□ 0.16
VPS4BO75351 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS4BO75351 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4BO75351 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.06■□□□□ 0.16
VPS4BO75351 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS4BO75351 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.06■□□□□ 0.16
VPS4BO75351 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
VPS4BO75351 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4BO75351 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VPS4BO75351 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VPS4BO75351 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VPS4BO75351 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 AL035633.1-201ENST00000406139 838 ntBASIC16.05■□□□□ 0.16
VPS4BO75351 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.05■□□□□ 0.16
VPS4BO75351 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 COX20P2-201ENST00000452636 358 ntBASIC16.05■□□□□ 0.16
VPS4BO75351 ALG1L5P-201ENST00000482043 771 ntBASIC16.05■□□□□ 0.16
VPS4BO75351 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VPS4BO75351 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS4BO75351 AC010654.1-201ENST00000615722 808 ntBASIC16.05■□□□□ 0.16
VPS4BO75351 AC004706.3-202ENST00000621574 984 ntBASIC16.05■□□□□ 0.16
VPS4BO75351 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
VPS4BO75351 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
VPS4BO75351 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
VPS4BO75351 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS4BO75351 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4BO75351 PI4KAP1-204ENST00000612579 1703 ntBASIC16.05■□□□□ 0.16
VPS4BO75351 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.04■□□□□ 0.16
VPS4BO75351 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms