Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 AC006277.1-201ENST00000624348 1610 ntBASIC15.86■□□□□ 0.13
VPS13AQ96RL7 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 FTLP10-202ENST00000505798 471 ntBASIC15.86■□□□□ 0.13
VPS13AQ96RL7 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 TARDBPP1-201ENST00000442013 1203 ntBASIC15.86■□□□□ 0.13
VPS13AQ96RL7 AC008267.1-201ENST00000474858 1069 ntBASIC15.86■□□□□ 0.13
VPS13AQ96RL7 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 AL049840.4-201ENST00000602422 811 ntBASIC15.86■□□□□ 0.13
VPS13AQ96RL7 MIR6756-201ENST00000616240 63 ntBASIC15.86■□□□□ 0.13
VPS13AQ96RL7 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS13AQ96RL7 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 RHOXF1P1-202ENST00000635473 501 ntBASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AL512652.2-201ENST00000625156 1716 ntBASIC15.85■□□□□ 0.13
VPS13AQ96RL7 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 BRI3BPP1-201ENST00000594224 787 ntBASIC15.85■□□□□ 0.13
VPS13AQ96RL7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AC016700.1-201ENST00000429424 312 ntBASIC15.85■□□□□ 0.13
VPS13AQ96RL7 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 FAM86LP-201ENST00000478302 853 ntBASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15.85■□□□□ 0.13
VPS13AQ96RL7 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 AC018892.3-201ENST00000623986 2499 ntBASIC15.84■□□□□ 0.13
VPS13AQ96RL7 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.84■□□□□ 0.13
VPS13AQ96RL7 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 AP003419.4-201ENST00000616071 517 ntBASIC15.84■□□□□ 0.13
VPS13AQ96RL7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 MAGEA5-201ENST00000446757 942 ntBASIC15.84■□□□□ 0.13
VPS13AQ96RL7 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms