Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HPS3Q969F9 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.1■□□□□ 0.49
HPS3Q969F9 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HPS3Q969F9 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.1■□□□□ 0.49
HPS3Q969F9 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.1■□□□□ 0.49
HPS3Q969F9 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.1■□□□□ 0.49
HPS3Q969F9 AC243562.1-201ENST00000560672 389 ntBASIC18.1■□□□□ 0.49
HPS3Q969F9 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.1■□□□□ 0.49
HPS3Q969F9 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.1■□□□□ 0.49
HPS3Q969F9 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HPS3Q969F9 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HPS3Q969F9 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HPS3Q969F9 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HPS3Q969F9 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HPS3Q969F9 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.1■□□□□ 0.49
HPS3Q969F9 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.1■□□□□ 0.49
HPS3Q969F9 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.1■□□□□ 0.49
HPS3Q969F9 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HPS3Q969F9 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.09■□□□□ 0.49
HPS3Q969F9 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.09■□□□□ 0.49
HPS3Q969F9 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.09■□□□□ 0.49
HPS3Q969F9 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HPS3Q969F9 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 AL589702.1-201ENST00000641229 1509 ntBASIC18.09■□□□□ 0.49
HPS3Q969F9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.09■□□□□ 0.49
HPS3Q969F9 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HPS3Q969F9 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.09■□□□□ 0.49
HPS3Q969F9 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HPS3Q969F9 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.09■□□□□ 0.49
HPS3Q969F9 HTR5BP-201ENST00000430851 1154 ntBASIC18.09■□□□□ 0.49
HPS3Q969F9 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.09■□□□□ 0.49
HPS3Q969F9 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.09■□□□□ 0.49
HPS3Q969F9 C20orf181-201ENST00000623918 480 ntBASIC18.09■□□□□ 0.49
HPS3Q969F9 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
HPS3Q969F9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
HPS3Q969F9 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.09■□□□□ 0.49
HPS3Q969F9 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HPS3Q969F9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.09■□□□□ 0.49
HPS3Q969F9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
HPS3Q969F9 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 CDC14C-201ENST00000428251 1719 ntBASIC18.09■□□□□ 0.49
HPS3Q969F9 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.09■□□□□ 0.49
HPS3Q969F9 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HPS3Q969F9 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HPS3Q969F9 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HPS3Q969F9 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
HPS3Q969F9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.49
HPS3Q969F9 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.08■□□□□ 0.49
HPS3Q969F9 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.08■□□□□ 0.49
HPS3Q969F9 LINC02447-202ENST00000501888 2146 ntBASIC18.08■□□□□ 0.49
HPS3Q969F9 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.08■□□□□ 0.49
HPS3Q969F9 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HPS3Q969F9 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
HPS3Q969F9 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HPS3Q969F9 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HPS3Q969F9 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HPS3Q969F9 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HPS3Q969F9 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
HPS3Q969F9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS3Q969F9 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.08■□□□□ 0.48
HPS3Q969F9 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS3Q969F9 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HPS3Q969F9 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS3Q969F9 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HPS3Q969F9 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.08■□□□□ 0.48
HPS3Q969F9 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.08■□□□□ 0.48
HPS3Q969F9 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS3Q969F9 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.08■□□□□ 0.48
HPS3Q969F9 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS3Q969F9 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
HPS3Q969F9 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.08■□□□□ 0.48
HPS3Q969F9 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.08■□□□□ 0.48
HPS3Q969F9 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HPS3Q969F9 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms