Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.23■□□□□ 0.67
BRF1Q92994 ADH5P3-201ENST00000433842 1137 ntBASIC19.23■□□□□ 0.67
BRF1Q92994 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.23■□□□□ 0.67
BRF1Q92994 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.23■□□□□ 0.67
BRF1Q92994 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.23■□□□□ 0.67
BRF1Q92994 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.23■□□□□ 0.67
BRF1Q92994 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.23■□□□□ 0.67
BRF1Q92994 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.23■□□□□ 0.67
BRF1Q92994 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.23■□□□□ 0.67
BRF1Q92994 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.23■□□□□ 0.67
BRF1Q92994 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.23■□□□□ 0.67
BRF1Q92994 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.23■□□□□ 0.67
BRF1Q92994 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.23■□□□□ 0.67
BRF1Q92994 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
BRF1Q92994 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
BRF1Q92994 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BRF1Q92994 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.22■□□□□ 0.67
BRF1Q92994 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.22■□□□□ 0.67
BRF1Q92994 AL139384.1-201ENST00000612143 3047 ntBASIC19.22■□□□□ 0.67
BRF1Q92994 AL162727.3-201ENST00000635661 2787 ntBASIC19.22■□□□□ 0.67
BRF1Q92994 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
BRF1Q92994 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.22■□□□□ 0.67
BRF1Q92994 AL589702.1-201ENST00000641229 1509 ntBASIC19.22■□□□□ 0.67
BRF1Q92994 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
BRF1Q92994 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 YBX2P1-201ENST00000394192 760 ntBASIC19.22■□□□□ 0.67
BRF1Q92994 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 TFAMP1-201ENST00000412727 736 ntBASIC19.22■□□□□ 0.67
BRF1Q92994 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.22■□□□□ 0.67
BRF1Q92994 ALG1L5P-201ENST00000482043 771 ntBASIC19.22■□□□□ 0.67
BRF1Q92994 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.22■□□□□ 0.67
BRF1Q92994 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.22■□□□□ 0.67
BRF1Q92994 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BRF1Q92994 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
BRF1Q92994 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.21■□□□□ 0.67
BRF1Q92994 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
BRF1Q92994 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
BRF1Q92994 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
BRF1Q92994 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
BRF1Q92994 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.21■□□□□ 0.67
BRF1Q92994 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.21■□□□□ 0.67
BRF1Q92994 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
BRF1Q92994 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.21■□□□□ 0.67
BRF1Q92994 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.21■□□□□ 0.67
BRF1Q92994 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.21■□□□□ 0.67
BRF1Q92994 C20orf181-201ENST00000623918 480 ntBASIC19.21■□□□□ 0.67
BRF1Q92994 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.21■□□□□ 0.67
BRF1Q92994 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
BRF1Q92994 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
BRF1Q92994 AKAP8P1-201ENST00000434743 1349 ntBASIC19.21■□□□□ 0.67
BRF1Q92994 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.21■□□□□ 0.67
BRF1Q92994 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BRF1Q92994 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 CDC14C-201ENST00000428251 1719 ntBASIC19.2■□□□□ 0.66
BRF1Q92994 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BRF1Q92994 LINC02447-202ENST00000501888 2146 ntBASIC19.2■□□□□ 0.66
BRF1Q92994 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms