Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC54Q8NEL0 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC54Q8NEL0 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.33□□□□□ -0.11
CCDC54Q8NEL0 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CCDC54Q8NEL0 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
CCDC54Q8NEL0 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 MIR4515-201ENST00000584082 81 ntBASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 AL356488.2-201ENST00000602755 427 ntBASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.33□□□□□ -0.12
CCDC54Q8NEL0 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 AC092364.2-201ENST00000596710 2692 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 AC023824.1-201ENST00000562945 2975 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 PMS2P4-201ENST00000412466 1052 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 RPS2P1-201ENST00000434010 821 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 DUSP5P1-201ENST00000441325 1139 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 RNPS1P1-201ENST00000507437 918 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 IFNL4P1-201ENST00000607083 540 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 AL645728.2-201ENST00000641974 660 ntBASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.32□□□□□ -0.12
CCDC54Q8NEL0 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.31□□□□□ -0.12
CCDC54Q8NEL0 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms