Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 ACTG1P14-201ENST00000446382 1122 ntBASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC65Q8IXS2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 AL589702.1-201ENST00000641229 1509 ntBASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 MIR648-201ENST00000385046 94 ntBASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 MKNK2P1-201ENST00000437526 628 ntBASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 RN7SL589P-201ENST00000481268 310 ntBASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 AC073389.1-201ENST00000595595 795 ntBASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 AL365330.1-201ENST00000607459 531 ntBASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC65Q8IXS2 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 HTR5BP-201ENST00000430851 1154 ntBASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 ADH5P3-201ENST00000433842 1137 ntBASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 AC105233.2-201ENST00000523697 349 ntBASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 AF228730.5-201ENST00000530288 346 ntBASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 AL138918.1-201ENST00000568306 659 ntBASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.13■□□□□ 0.49
CCDC65Q8IXS2 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms