Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SH3RF1Q7Z6J0 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SH3RF1Q7Z6J0 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SH3RF1Q7Z6J0 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 SPTLC1P1-201ENST00000447199 261 ntBASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 KRT17P7-201ENST00000451704 1104 ntBASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 AC008267.7-201ENST00000624570 1194 ntBASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 WASH6P-202ENST00000359512 1437 ntBASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SH3RF1Q7Z6J0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AC022144.1-201ENST00000602255 1580 ntBASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AL596087.1-201ENST00000400979 1969 ntBASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 AL365203.3-201ENST00000609742 2057 ntBASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SH3RF1Q7Z6J0 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SH3RF1Q7Z6J0 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SH3RF1Q7Z6J0 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.64■□□□□ 0.58
SH3RF1Q7Z6J0 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
SH3RF1Q7Z6J0 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
SH3RF1Q7Z6J0 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SH3RF1Q7Z6J0 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms