Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 LINC02199-201ENST00000506655 2702 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 RPS8P6-201ENST00000426177 609 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AP006288.1-201ENST00000446065 395 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 DNAJB3-202ENST00000449667 1266 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 SPDYE11-202ENST00000450699 704 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AC069335.1-201ENST00000489972 472 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 SPDYE9P-201ENST00000570642 692 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 SPDYE10P-202ENST00000612005 668 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 SPDYE8P-202ENST00000612377 668 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AC006538.3-201ENST00000612495 578 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AC020765.3-201ENST00000613051 740 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AL691403.2-201ENST00000618460 490 ntBASIC19.73■□□□□ 0.75
VPS53Q5VIR6 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS53Q5VIR6 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 FAM86C2P-203ENST00000528684 1004 ntBASIC19.72■□□□□ 0.75
VPS53Q5VIR6 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 AL596442.2-201ENST00000610240 980 ntBASIC19.72■□□□□ 0.75
VPS53Q5VIR6 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.72■□□□□ 0.75
VPS53Q5VIR6 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS53Q5VIR6 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS53Q5VIR6 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms