Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LIM2P55344 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.52■□□□□ 0.08
LIM2P55344 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.52■□□□□ 0.08
LIM2P55344 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LIM2P55344 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.52■□□□□ 0.08
LIM2P55344 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
LIM2P55344 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.52■□□□□ 0.08
LIM2P55344 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.08
LIM2P55344 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.52■□□□□ 0.08
LIM2P55344 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.52■□□□□ 0.08
LIM2P55344 AC073389.1-201ENST00000595595 795 ntBASIC15.52■□□□□ 0.08
LIM2P55344 AC022145.2-201ENST00000598203 171 ntBASIC15.52■□□□□ 0.08
LIM2P55344 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.52■□□□□ 0.08
LIM2P55344 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIM2P55344 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LIM2P55344 AC055717.3-201ENST00000622967 595 ntBASIC15.52■□□□□ 0.08
LIM2P55344 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.52■□□□□ 0.08
LIM2P55344 AL513210.1-201ENST00000629608 234 ntBASIC15.52■□□□□ 0.08
LIM2P55344 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIM2P55344 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIM2P55344 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIM2P55344 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LIM2P55344 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIM2P55344 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIM2P55344 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.52■□□□□ 0.07
LIM2P55344 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.52■□□□□ 0.07
LIM2P55344 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.52■□□□□ 0.07
LIM2P55344 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LIM2P55344 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
LIM2P55344 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIM2P55344 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.51■□□□□ 0.07
LIM2P55344 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
LIM2P55344 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.51■□□□□ 0.07
LIM2P55344 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LIM2P55344 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.51■□□□□ 0.07
LIM2P55344 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LIM2P55344 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.51■□□□□ 0.07
LIM2P55344 REXO1L8P-201ENST00000604378 1897 ntBASIC15.51■□□□□ 0.07
LIM2P55344 U82695.1-201ENST00000635752 1889 ntBASIC15.51■□□□□ 0.07
LIM2P55344 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 MIR1233-2-201ENST00000408138 82 ntBASIC15.51■□□□□ 0.07
LIM2P55344 MIR1233-1-201ENST00000408722 82 ntBASIC15.51■□□□□ 0.07
LIM2P55344 AL592309.1-201ENST00000443127 649 ntBASIC15.51■□□□□ 0.07
LIM2P55344 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.51■□□□□ 0.07
LIM2P55344 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.51■□□□□ 0.07
LIM2P55344 IGHV3-62-201ENST00000520057 340 ntBASIC15.51■□□□□ 0.07
LIM2P55344 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.51■□□□□ 0.07
LIM2P55344 AC105233.2-201ENST00000523697 349 ntBASIC15.51■□□□□ 0.07
LIM2P55344 AF228730.5-201ENST00000530288 346 ntBASIC15.51■□□□□ 0.07
LIM2P55344 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.51■□□□□ 0.07
LIM2P55344 LINC01225-203ENST00000563550 1244 ntBASIC15.51■□□□□ 0.07
LIM2P55344 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.51■□□□□ 0.07
LIM2P55344 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.51■□□□□ 0.07
LIM2P55344 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.51■□□□□ 0.07
LIM2P55344 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.51■□□□□ 0.07
LIM2P55344 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.51■□□□□ 0.07
LIM2P55344 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.51■□□□□ 0.07
LIM2P55344 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIM2P55344 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIM2P55344 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LIM2P55344 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIM2P55344 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.5■□□□□ 0.07
LIM2P55344 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LIM2P55344 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIM2P55344 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIM2P55344 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
LIM2P55344 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LIM2P55344 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LIM2P55344 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.5■□□□□ 0.07
LIM2P55344 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms