Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 KRT18P27-201ENST00000427733 1299 ntBASIC12.53□□□□□ -0.4
HLA-DMBP28068 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AC087641.1-201ENST00000557561 1021 ntBASIC12.53□□□□□ -0.4
HLA-DMBP28068 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 LITAF-211ENST00000572255 516 ntTSL 4 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AL049840.3-201ENST00000602669 611 ntBASIC12.53□□□□□ -0.4
HLA-DMBP28068 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 MIR7706-201ENST00000613747 67 ntBASIC12.53□□□□□ -0.4
HLA-DMBP28068 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AP002414.3-201ENST00000589352 1468 ntBASIC12.53□□□□□ -0.4
HLA-DMBP28068 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.52□□□□□ -0.4
HLA-DMBP28068 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DMBP28068 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
HLA-DMBP28068 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DMBP28068 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DMBP28068 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DMBP28068 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DMBP28068 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.52□□□□□ -0.4
HLA-DMBP28068 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DMBP28068 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HLA-DMBP28068 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
HLA-DMBP28068 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 CENPM-204ENST00000402420 688 ntTSL 5 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 AC136632.2-201ENST00000512891 861 ntBASIC12.52□□□□□ -0.41
HLA-DMBP28068 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 WT1-AS_2.1-201ENST00000613208 137 ntBASIC12.52□□□□□ -0.41
HLA-DMBP28068 BSG-214ENST00000614867 960 ntTSL 3 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC12.52□□□□□ -0.41
HLA-DMBP28068 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 DBET-201ENST00000630918 3363 ntBASIC12.52□□□□□ -0.41
HLA-DMBP28068 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DMBP28068 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
HLA-DMBP28068 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 FLJ16779-201ENST00000612722 7638 ntBASIC12.51□□□□□ -0.41
HLA-DMBP28068 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DMBP28068 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DMBP28068 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms