Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C2orf69P2-201ENST00000562032 1123 ntBASIC14.24□□□□□ -0.13
COL8A1P27658 COG4-212ENST00000564653 590 ntTSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.24□□□□□ -0.13
COL8A1P27658 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.24□□□□□ -0.13
COL8A1P27658 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.24□□□□□ -0.13
COL8A1P27658 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
COL8A1P27658 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL8A1P27658 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL8A1P27658 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.24□□□□□ -0.13
COL8A1P27658 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC14.23□□□□□ -0.13
COL8A1P27658 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.23□□□□□ -0.13
COL8A1P27658 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 BCRP2-202ENST00000447763 634 ntBASIC14.23□□□□□ -0.13
COL8A1P27658 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.23□□□□□ -0.13
COL8A1P27658 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.23□□□□□ -0.13
COL8A1P27658 BCRP6-201ENST00000510112 632 ntBASIC14.23□□□□□ -0.13
COL8A1P27658 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC14.23□□□□□ -0.13
COL8A1P27658 BCRP7-201ENST00000511549 544 ntBASIC14.23□□□□□ -0.13
COL8A1P27658 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 MIR4492-201ENST00000581627 80 ntBASIC14.23□□□□□ -0.13
COL8A1P27658 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.23□□□□□ -0.13
COL8A1P27658 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.23□□□□□ -0.13
COL8A1P27658 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.23□□□□□ -0.13
COL8A1P27658 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.23□□□□□ -0.13
COL8A1P27658 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.23□□□□□ -0.13
COL8A1P27658 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.23□□□□□ -0.13
COL8A1P27658 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
COL8A1P27658 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL8A1P27658 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC14.23□□□□□ -0.13
COL8A1P27658 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC14.23□□□□□ -0.13
COL8A1P27658 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 AC012313.1-201ENST00000593393 3059 ntBASIC14.23□□□□□ -0.13
COL8A1P27658 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.23□□□□□ -0.13
COL8A1P27658 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.23□□□□□ -0.13
COL8A1P27658 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL8A1P27658 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.23□□□□□ -0.13
COL8A1P27658 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.22□□□□□ -0.13
COL8A1P27658 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms