Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
XRCC1P18887 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.35■□□□□ 0.21
XRCC1P18887 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
XRCC1P18887 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.35■□□□□ 0.21
XRCC1P18887 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
XRCC1P18887 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
XRCC1P18887 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
XRCC1P18887 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
XRCC1P18887 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.34■□□□□ 0.21
XRCC1P18887 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 AC092384.3-202ENST00000564646 2873 ntBASIC16.34■□□□□ 0.21
XRCC1P18887 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.34■□□□□ 0.21
XRCC1P18887 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
XRCC1P18887 RNU1-129P-201ENST00000384064 167 ntBASIC16.34■□□□□ 0.21
XRCC1P18887 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.34■□□□□ 0.21
XRCC1P18887 AL355306.1-201ENST00000415580 579 ntBASIC16.34■□□□□ 0.21
XRCC1P18887 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.34■□□□□ 0.21
XRCC1P18887 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
XRCC1P18887 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.34■□□□□ 0.21
XRCC1P18887 U1.21-201ENST00000580816 167 ntBASIC16.34■□□□□ 0.21
XRCC1P18887 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.34■□□□□ 0.21
XRCC1P18887 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 AC026120.1-201ENST00000611536 926 ntBASIC16.34■□□□□ 0.21
XRCC1P18887 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
XRCC1P18887 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.34■□□□□ 0.21
XRCC1P18887 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
XRCC1P18887 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
XRCC1P18887 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
XRCC1P18887 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
XRCC1P18887 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.34■□□□□ 0.21
XRCC1P18887 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
XRCC1P18887 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
XRCC1P18887 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
XRCC1P18887 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
XRCC1P18887 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
XRCC1P18887 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
XRCC1P18887 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.33■□□□□ 0.21
XRCC1P18887 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
XRCC1P18887 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
XRCC1P18887 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
XRCC1P18887 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.33■□□□□ 0.21
XRCC1P18887 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
XRCC1P18887 AC104640.1-201ENST00000562617 2109 ntBASIC16.33■□□□□ 0.21
XRCC1P18887 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.33■□□□□ 0.2
XRCC1P18887 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
XRCC1P18887 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.33■□□□□ 0.2
XRCC1P18887 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.33■□□□□ 0.2
XRCC1P18887 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.33■□□□□ 0.2
XRCC1P18887 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.33■□□□□ 0.2
XRCC1P18887 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 CYP2A7P1-201ENST00000595391 815 ntBASIC16.33■□□□□ 0.2
XRCC1P18887 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.33■□□□□ 0.2
XRCC1P18887 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.33■□□□□ 0.2
XRCC1P18887 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
XRCC1P18887 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
XRCC1P18887 AKAP8P1-201ENST00000434743 1349 ntBASIC16.33■□□□□ 0.2
XRCC1P18887 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
XRCC1P18887 AC144831.1-201ENST00000573312 2656 ntBASIC16.33■□□□□ 0.2
XRCC1P18887 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.33■□□□□ 0.2
XRCC1P18887 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
XRCC1P18887 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
XRCC1P18887 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.33■□□□□ 0.2
XRCC1P18887 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms