Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC12.73□□□□□ -0.37
CXCL1P09341 TSPY7P-201ENST00000431358 1114 ntBASIC12.73□□□□□ -0.37
CXCL1P09341 SAPCD2P2-201ENST00000431719 1174 ntBASIC12.73□□□□□ -0.37
CXCL1P09341 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.73□□□□□ -0.37
CXCL1P09341 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC12.73□□□□□ -0.37
CXCL1P09341 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC12.73□□□□□ -0.37
CXCL1P09341 GCSHP2-201ENST00000560971 527 ntBASIC12.73□□□□□ -0.37
CXCL1P09341 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC12.73□□□□□ -0.37
CXCL1P09341 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
CXCL1P09341 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 AC019129.2-201ENST00000609837 1235 ntBASIC12.73□□□□□ -0.37
CXCL1P09341 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC12.73□□□□□ -0.37
CXCL1P09341 LITAF-220ENST00000620789 692 ntTSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 CICP17-201ENST00000418553 2377 ntBASIC12.73□□□□□ -0.37
CXCL1P09341 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 PC-204ENST00000524491 1714 ntTSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 GGT3P-204ENST00000453783 1664 ntBASIC12.73□□□□□ -0.37
CXCL1P09341 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC12.73□□□□□ -0.37
CXCL1P09341 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.73□□□□□ -0.37
CXCL1P09341 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CXCL1P09341 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CXCL1P09341 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 REXO1L8P-201ENST00000604378 1897 ntBASIC12.72□□□□□ -0.37
CXCL1P09341 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CXCL1P09341 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
CXCL1P09341 FAM8A6P-201ENST00000407496 1135 ntBASIC12.72□□□□□ -0.37
CXCL1P09341 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 AP003733.1-201ENST00000491725 852 ntBASIC12.72□□□□□ -0.37
CXCL1P09341 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC12.72□□□□□ -0.37
CXCL1P09341 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC12.72□□□□□ -0.37
CXCL1P09341 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC12.72□□□□□ -0.37
CXCL1P09341 AL355075.4-201ENST00000554988 638 ntBASIC12.72□□□□□ -0.37
CXCL1P09341 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC12.72□□□□□ -0.37
CXCL1P09341 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.72□□□□□ -0.37
CXCL1P09341 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.72□□□□□ -0.37
CXCL1P09341 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC12.72□□□□□ -0.37
CXCL1P09341 AC079602.3-201ENST00000623931 403 ntBASIC12.72□□□□□ -0.37
CXCL1P09341 AC141257.4-201ENST00000634557 245 ntBASIC12.72□□□□□ -0.37
CXCL1P09341 AC136944.6-201ENST00000634818 245 ntBASIC12.72□□□□□ -0.37
CXCL1P09341 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms