Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ZBTB45P2-201ENST00000452245 1531 ntBASIC19.65■□□□□ 0.74
COL4A1P02462 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A1P02462 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL4A1P02462 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
COL4A1P02462 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 FAM86MP-201ENST00000340703 885 ntBASIC19.65■□□□□ 0.74
COL4A1P02462 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 AL442647.2-201ENST00000429864 857 ntBASIC19.65■□□□□ 0.74
COL4A1P02462 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A1P02462 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL4A1P02462 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A1P02462 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
COL4A1P02462 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A1P02462 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A1P02462 AC243562.2-201ENST00000561247 970 ntBASIC19.65■□□□□ 0.74
COL4A1P02462 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A1P02462 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A1P02462 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL4A1P02462 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
COL4A1P02462 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC19.64■□□□□ 0.74
COL4A1P02462 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
COL4A1P02462 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A1P02462 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.64■□□□□ 0.74
COL4A1P02462 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
COL4A1P02462 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
COL4A1P02462 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A1P02462 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
COL4A1P02462 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A1P02462 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.64■□□□□ 0.73
COL4A1P02462 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
COL4A1P02462 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A1P02462 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.64■□□□□ 0.73
COL4A1P02462 AL049840.4-201ENST00000602422 811 ntBASIC19.64■□□□□ 0.73
COL4A1P02462 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A1P02462 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC19.64■□□□□ 0.73
COL4A1P02462 INTS4P2-202ENST00000614726 2019 ntBASIC19.64■□□□□ 0.73
COL4A1P02462 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.63■□□□□ 0.73
COL4A1P02462 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 TOMM22P5-201ENST00000416399 439 ntBASIC19.63■□□□□ 0.73
COL4A1P02462 AC136604.1-201ENST00000418535 575 ntBASIC19.63■□□□□ 0.73
COL4A1P02462 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC19.63■□□□□ 0.73
COL4A1P02462 FAM86LP-201ENST00000478302 853 ntBASIC19.63■□□□□ 0.73
COL4A1P02462 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.63■□□□□ 0.73
COL4A1P02462 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A1P02462 AC018892.3-201ENST00000623986 2499 ntBASIC19.63■□□□□ 0.73
COL4A1P02462 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A1P02462 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.62■□□□□ 0.73
COL4A1P02462 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
COL4A1P02462 AC099336.1-201ENST00000417053 1171 ntBASIC19.62■□□□□ 0.73
COL4A1P02462 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A1P02462 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A1P02462 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A1P02462 AC106760.1-201ENST00000508690 800 ntBASIC19.62■□□□□ 0.73
COL4A1P02462 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A1P02462 AC015936.2-201ENST00000593177 259 ntBASIC19.62■□□□□ 0.73
COL4A1P02462 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A1P02462 AL606495.2-201ENST00000605867 535 ntBASIC19.62■□□□□ 0.73
COL4A1P02462 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A1P02462 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
COL4A1P02462 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL4A1P02462 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL4A1P02462 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A1P02462 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A1P02462 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A1P02462 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL4A1P02462 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A1P02462 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A1P02462 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A1P02462 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 NEU3-203ENST00000529024 581 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A1P02462 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
COL4A1P02462 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC19.62■□□□□ 0.73
COL4A1P02462 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A1P02462 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms