Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.39■□□□□ 0.21
SHOX2O60902 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 AC126365.1-201ENST00000578585 1514 ntBASIC16.39■□□□□ 0.21
SHOX2O60902 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 AC243591.1-201ENST00000452967 1364 ntBASIC16.38■□□□□ 0.21
SHOX2O60902 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SHOX2O60902 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 AC117489.1-201ENST00000625169 3217 ntBASIC16.38■□□□□ 0.21
SHOX2O60902 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
SHOX2O60902 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC16.38■□□□□ 0.21
SHOX2O60902 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SHOX2O60902 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SHOX2O60902 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SHOX2O60902 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.38■□□□□ 0.21
SHOX2O60902 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SHOX2O60902 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.38■□□□□ 0.21
SHOX2O60902 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.38■□□□□ 0.21
SHOX2O60902 LINC01238-205ENST00000567549 1107 ntBASIC16.38■□□□□ 0.21
SHOX2O60902 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.38■□□□□ 0.21
SHOX2O60902 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.38■□□□□ 0.21
SHOX2O60902 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.38■□□□□ 0.21
SHOX2O60902 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.38■□□□□ 0.21
SHOX2O60902 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SHOX2O60902 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.38■□□□□ 0.21
SHOX2O60902 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SHOX2O60902 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.37■□□□□ 0.21
SHOX2O60902 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.37■□□□□ 0.21
SHOX2O60902 SLC22A20-204ENST00000530038 1673 ntBASIC16.37■□□□□ 0.21
SHOX2O60902 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC16.37■□□□□ 0.21
SHOX2O60902 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC16.37■□□□□ 0.21
SHOX2O60902 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.37■□□□□ 0.21
SHOX2O60902 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.37■□□□□ 0.21
SHOX2O60902 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.37■□□□□ 0.21
SHOX2O60902 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.37■□□□□ 0.21
SHOX2O60902 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SHOX2O60902 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SHOX2O60902 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
SHOX2O60902 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SHOX2O60902 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.37■□□□□ 0.21
SHOX2O60902 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.37■□□□□ 0.21
SHOX2O60902 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.37■□□□□ 0.21
SHOX2O60902 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC16.37■□□□□ 0.21
SHOX2O60902 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.37■□□□□ 0.21
SHOX2O60902 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.37■□□□□ 0.21
SHOX2O60902 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.37■□□□□ 0.21
SHOX2O60902 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SHOX2O60902 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms