Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.79■□□□□ 0.28
CDX2Q99626 AC007663.3-201ENST00000609632 465 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 AC091544.8-201ENST00000619490 361 ntBASIC16.79■□□□□ 0.28
CDX2Q99626 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.79■□□□□ 0.28
CDX2Q99626 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDX2Q99626 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.78■□□□□ 0.28
CDX2Q99626 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.78■□□□□ 0.28
CDX2Q99626 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.78■□□□□ 0.28
CDX2Q99626 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.78■□□□□ 0.28
CDX2Q99626 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CDX2Q99626 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CDX2Q99626 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 AC007274.2-201ENST00000421675 662 ntBASIC16.78■□□□□ 0.28
CDX2Q99626 AL008707.1-201ENST00000422498 534 ntBASIC16.78■□□□□ 0.28
CDX2Q99626 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC16.78■□□□□ 0.28
CDX2Q99626 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.78■□□□□ 0.28
CDX2Q99626 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.78■□□□□ 0.28
CDX2Q99626 AC145423.3-201ENST00000615987 467 ntBASIC16.78■□□□□ 0.28
CDX2Q99626 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.78■□□□□ 0.28
CDX2Q99626 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CDX2Q99626 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.78■□□□□ 0.28
CDX2Q99626 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDX2Q99626 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.77■□□□□ 0.28
CDX2Q99626 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.77■□□□□ 0.28
CDX2Q99626 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
CDX2Q99626 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CDX2Q99626 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 MIR1227-201ENST00000408484 88 ntBASIC16.77■□□□□ 0.28
CDX2Q99626 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.77■□□□□ 0.28
CDX2Q99626 SERPINA13P-202ENST00000478994 924 ntBASIC16.77■□□□□ 0.28
CDX2Q99626 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.77■□□□□ 0.28
CDX2Q99626 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.77■□□□□ 0.28
CDX2Q99626 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.77■□□□□ 0.28
CDX2Q99626 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC16.77■□□□□ 0.28
CDX2Q99626 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.77■□□□□ 0.28
CDX2Q99626 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CDX2Q99626 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.77■□□□□ 0.28
CDX2Q99626 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDX2Q99626 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX2Q99626 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX2Q99626 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CDX2Q99626 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX2Q99626 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDX2Q99626 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CDX2Q99626 AC008132.1-202ENST00000342005 1389 ntBASIC16.77■□□□□ 0.27
CDX2Q99626 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.76■□□□□ 0.27
CDX2Q99626 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.76■□□□□ 0.27
CDX2Q99626 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 AL138709.1-201ENST00000614840 1693 ntBASIC16.76■□□□□ 0.27
CDX2Q99626 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CDX2Q99626 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CDX2Q99626 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC16.76■□□□□ 0.27
CDX2Q99626 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.76■□□□□ 0.27
CDX2Q99626 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms