Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 SKP2-204ENST00000508514 821 ntTSL 3 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 AC105339.3-201ENST00000560043 636 ntBASIC12.32□□□□□ -0.44
LINC00477Q96M19 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 AC008735.5-201ENST00000623544 497 ntBASIC12.32□□□□□ -0.44
LINC00477Q96M19 AC005593.1-201ENST00000624894 515 ntBASIC12.32□□□□□ -0.44
LINC00477Q96M19 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 U82695.1-201ENST00000635752 1889 ntBASIC12.31□□□□□ -0.44
LINC00477Q96M19 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 AKR1C7P-201ENST00000305623 895 ntBASIC12.31□□□□□ -0.44
LINC00477Q96M19 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 RPS2P1-201ENST00000434010 821 ntBASIC12.31□□□□□ -0.44
LINC00477Q96M19 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 DUSP5P1-201ENST00000441325 1139 ntBASIC12.31□□□□□ -0.44
LINC00477Q96M19 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 MTRF1LP2-201ENST00000506027 1122 ntBASIC12.31□□□□□ -0.44
LINC00477Q96M19 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 SDHD-206ENST00000528182 754 ntTSL 3 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 RIN3-211ENST00000557762 517 ntTSL 3 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 MIR4515-201ENST00000584082 81 ntBASIC12.31□□□□□ -0.44
LINC00477Q96M19 CYGB-205ENST00000590175 830 ntTSL 3 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 AL592424.1-201ENST00000563624 1536 ntBASIC12.31□□□□□ -0.44
LINC00477Q96M19 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
LINC00477Q96M19 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC00477Q96M19 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC00477Q96M19 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
LINC00477Q96M19 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms