Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SYNE3Q6ZMZ3 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 AC092865.5-201ENST00000545435 363 ntBASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.28■□□□□ 0.68
SYNE3Q6ZMZ3 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 SPDYE11-202ENST00000450699 704 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 CEND1P1-201ENST00000451006 455 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 RN7SL589P-201ENST00000481268 310 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 ALG1L5P-201ENST00000482043 771 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 AL135744.1-201ENST00000565098 629 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 SPDYE9P-201ENST00000570642 692 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 AC026120.1-201ENST00000611536 926 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 SPDYE10P-202ENST00000612005 668 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 SPDYE8P-202ENST00000612377 668 ntBASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SYNE3Q6ZMZ3 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE3Q6ZMZ3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE3Q6ZMZ3 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SYNE3Q6ZMZ3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 U82695.1-201ENST00000635752 1889 ntBASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 PRYP6-201ENST00000514804 343 ntBASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms