Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 AC004870.1-201ENST00000315132 882 ntBASIC18.66■□□□□ 0.58
ATL3Q6DD88 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 AC140658.5-201ENST00000438532 169 ntBASIC18.66■□□□□ 0.58
ATL3Q6DD88 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ATL3Q6DD88 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ATL3Q6DD88 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 MIR4321-201ENST00000592276 80 ntBASIC18.65■□□□□ 0.58
ATL3Q6DD88 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 AC104692.2-201ENST00000603054 253 ntBASIC18.65■□□□□ 0.58
ATL3Q6DD88 AC116407.3-201ENST00000623905 1129 ntBASIC18.65■□□□□ 0.58
ATL3Q6DD88 AC010507.1-201ENST00000633895 436 ntBASIC18.65■□□□□ 0.58
ATL3Q6DD88 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ATL3Q6DD88 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 AP001282.1-201ENST00000531301 1499 ntBASIC18.65■□□□□ 0.58
ATL3Q6DD88 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.65■□□□□ 0.58
ATL3Q6DD88 AL589702.1-201ENST00000641229 1509 ntBASIC18.64■□□□□ 0.58
ATL3Q6DD88 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ATL3Q6DD88 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.58
ATL3Q6DD88 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
ATL3Q6DD88 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ATL3Q6DD88 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
ATL3Q6DD88 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 AC093909.1-201ENST00000504731 1122 ntBASIC18.64■□□□□ 0.57
ATL3Q6DD88 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 IGHV3-22-201ENST00000520721 359 ntBASIC18.64■□□□□ 0.57
ATL3Q6DD88 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 AC002347.1-201ENST00000569543 541 ntBASIC18.64■□□□□ 0.57
ATL3Q6DD88 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 AC023141.13-201ENST00000604991 943 ntBASIC18.64■□□□□ 0.57
ATL3Q6DD88 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.64■□□□□ 0.57
ATL3Q6DD88 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ATL3Q6DD88 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 AC073439.1-201ENST00000624121 1774 ntBASIC18.63■□□□□ 0.57
ATL3Q6DD88 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms