Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH1Q08174 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH1Q08174 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
PCDH1Q08174 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH1Q08174 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.81■□□□□ 0.12
PCDH1Q08174 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.81■□□□□ 0.12
PCDH1Q08174 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH1Q08174 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH1Q08174 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH1Q08174 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH1Q08174 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.81■□□□□ 0.12
PCDH1Q08174 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH1Q08174 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.81■□□□□ 0.12
PCDH1Q08174 AC245100.5-201ENST00000452108 331 ntBASIC15.81■□□□□ 0.12
PCDH1Q08174 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PCDH1Q08174 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PCDH1Q08174 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
PCDH1Q08174 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.81■□□□□ 0.12
PCDH1Q08174 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.81■□□□□ 0.12
PCDH1Q08174 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.81■□□□□ 0.12
PCDH1Q08174 AC073389.1-201ENST00000595595 795 ntBASIC15.81■□□□□ 0.12
PCDH1Q08174 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
PCDH1Q08174 AL513190.1-201ENST00000621254 727 ntBASIC15.81■□□□□ 0.12
PCDH1Q08174 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.81■□□□□ 0.12
PCDH1Q08174 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PCDH1Q08174 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PCDH1Q08174 AC092865.6-201ENST00000642101 219 ntBASIC15.81■□□□□ 0.12
PCDH1Q08174 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH1Q08174 PCDHA1-201ENST00000378133 2726 ntBASIC15.81■□□□□ 0.12
PCDH1Q08174 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PCDH1Q08174 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
PCDH1Q08174 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH1Q08174 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 AC073439.1-201ENST00000624121 1774 ntBASIC15.8■□□□□ 0.12
PCDH1Q08174 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH1Q08174 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDH1Q08174 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH1Q08174 MED15P5-201ENST00000423150 992 ntBASIC15.8■□□□□ 0.12
PCDH1Q08174 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDH1Q08174 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDH1Q08174 AC112191.1-201ENST00000523689 701 ntBASIC15.8■□□□□ 0.12
PCDH1Q08174 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.8■□□□□ 0.12
PCDH1Q08174 AC002347.1-201ENST00000569543 541 ntBASIC15.8■□□□□ 0.12
PCDH1Q08174 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 AC099522.2-201ENST00000607001 744 ntBASIC15.8■□□□□ 0.12
PCDH1Q08174 AL365330.1-201ENST00000607459 531 ntBASIC15.8■□□□□ 0.12
PCDH1Q08174 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.8■□□□□ 0.12
PCDH1Q08174 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH1Q08174 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PCDH1Q08174 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.8■□□□□ 0.12
PCDH1Q08174 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
PCDH1Q08174 AC068418.2-201ENST00000577309 3703 ntBASIC15.8■□□□□ 0.12
PCDH1Q08174 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PCDH1Q08174 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PCDH1Q08174 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PCDH1Q08174 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.79■□□□□ 0.12
PCDH1Q08174 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.79■□□□□ 0.12
PCDH1Q08174 AKAP8P1-201ENST00000434743 1349 ntBASIC15.79■□□□□ 0.12
PCDH1Q08174 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCDH1Q08174 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms