Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 AL691432.1-201ENST00000596308 1422 ntBASIC13.34□□□□□ -0.27
LMO4P61968 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.34□□□□□ -0.27
LMO4P61968 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
LMO4P61968 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
LMO4P61968 DGCR5-201ENST00000399539 862 ntBASIC13.34□□□□□ -0.27
LMO4P61968 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.34□□□□□ -0.27
LMO4P61968 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.34□□□□□ -0.27
LMO4P61968 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.34□□□□□ -0.27
LMO4P61968 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.34□□□□□ -0.27
LMO4P61968 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.34□□□□□ -0.27
LMO4P61968 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC13.34□□□□□ -0.27
LMO4P61968 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.34□□□□□ -0.27
LMO4P61968 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.34□□□□□ -0.27
LMO4P61968 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.34□□□□□ -0.27
LMO4P61968 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.34□□□□□ -0.27
LMO4P61968 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LMO4P61968 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
LMO4P61968 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
LMO4P61968 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
LMO4P61968 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC13.33□□□□□ -0.28
LMO4P61968 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.33□□□□□ -0.28
LMO4P61968 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
LMO4P61968 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.33□□□□□ -0.28
LMO4P61968 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 GK-202ENST00000378941 458 ntTSL 3 BASIC13.33□□□□□ -0.28
LMO4P61968 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.33□□□□□ -0.28
LMO4P61968 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.33□□□□□ -0.28
LMO4P61968 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.33□□□□□ -0.28
LMO4P61968 AC245100.5-201ENST00000452108 331 ntBASIC13.33□□□□□ -0.28
LMO4P61968 AL589987.1-201ENST00000453380 819 ntBASIC13.33□□□□□ -0.28
LMO4P61968 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.33□□□□□ -0.28
LMO4P61968 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.33□□□□□ -0.28
LMO4P61968 AC025048.3-201ENST00000590609 569 ntBASIC13.33□□□□□ -0.28
LMO4P61968 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.33□□□□□ -0.28
LMO4P61968 AC005702.4-201ENST00000618393 416 ntBASIC13.33□□□□□ -0.28
LMO4P61968 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
LMO4P61968 AC138969.3-201ENST00000546612 1459 ntBASIC13.33□□□□□ -0.28
LMO4P61968 AC138932.2-201ENST00000548268 1459 ntBASIC13.33□□□□□ -0.28
LMO4P61968 AC126755.4-201ENST00000549796 1459 ntBASIC13.33□□□□□ -0.28
LMO4P61968 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
LMO4P61968 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LMO4P61968 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LMO4P61968 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.32□□□□□ -0.28
LMO4P61968 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC13.32□□□□□ -0.28
LMO4P61968 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
LMO4P61968 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LMO4P61968 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms