Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL4A1P02462 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 MPV17-208ENST00000405076 603 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A1P02462 MEP1AP4-201ENST00000423244 1087 ntBASIC19.68■□□□□ 0.74
COL4A1P02462 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A1P02462 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.68■□□□□ 0.74
COL4A1P02462 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A1P02462 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL4A1P02462 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A1P02462 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL4A1P02462 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 PDIA3P1-201ENST00000471856 1510 ntBASIC19.67■□□□□ 0.74
COL4A1P02462 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
COL4A1P02462 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL4A1P02462 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC19.67■□□□□ 0.74
COL4A1P02462 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.67■□□□□ 0.74
COL4A1P02462 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.67■□□□□ 0.74
COL4A1P02462 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.67■□□□□ 0.74
COL4A1P02462 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
COL4A1P02462 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL4A1P02462 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
COL4A1P02462 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
COL4A1P02462 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.67■□□□□ 0.74
COL4A1P02462 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.67■□□□□ 0.74
COL4A1P02462 AC097359.3-201ENST00000603982 1210 ntBASIC19.67■□□□□ 0.74
COL4A1P02462 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.67■□□□□ 0.74
COL4A1P02462 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL4A1P02462 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL4A1P02462 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL4A1P02462 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A1P02462 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.66■□□□□ 0.74
COL4A1P02462 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A1P02462 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
COL4A1P02462 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL4A1P02462 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC19.66■□□□□ 0.74
COL4A1P02462 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL4A1P02462 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A1P02462 AC036164.1-201ENST00000570544 333 ntBASIC19.66■□□□□ 0.74
COL4A1P02462 GNRHR2-203ENST00000581100 1187 ntBASIC19.66■□□□□ 0.74
COL4A1P02462 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A1P02462 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
COL4A1P02462 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A1P02462 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A1P02462 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL4A1P02462 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL4A1P02462 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A1P02462 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A1P02462 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A1P02462 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.66■□□□□ 0.74
COL4A1P02462 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL4A1P02462 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL4A1P02462 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A1P02462 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A1P02462 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 AC234783.1-201ENST00000441761 496 ntBASIC19.65■□□□□ 0.74
COL4A1P02462 ELP6-209ENST00000446787 894 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A1P02462 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A1P02462 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A1P02462 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A1P02462 AL359711.2-201ENST00000563105 872 ntBASIC19.65■□□□□ 0.74
COL4A1P02462 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL4A1P02462 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.65■□□□□ 0.74
COL4A1P02462 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A1P02462 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A1P02462 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
COL4A1P02462 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms