Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC21.33■■□□□ 1
COL3A1P02461 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL3A1P02461 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC21.32■■□□□ 1
COL3A1P02461 KRT18P64-201ENST00000434946 1219 ntBASIC21.32■■□□□ 1
COL3A1P02461 API5-211ENST00000534695 560 ntTSL 5 BASIC21.32■■□□□ 1
COL3A1P02461 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.32■■□□□ 1
COL3A1P02461 PGR-209ENST00000617858 2816 ntTSL 5 BASIC21.32■■□□□ 1
COL3A1P02461 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
COL3A1P02461 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
COL3A1P02461 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 AC124067.4-201ENST00000519691 2379 ntBASIC21.32■■□□□ 1
COL3A1P02461 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
COL3A1P02461 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC21.32■■□□□ 1
COL3A1P02461 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC21.32■■□□□ 1
COL3A1P02461 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC21.32■■□□□ 1
COL3A1P02461 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC21.32■■□□□ 1
COL3A1P02461 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC21.32■■□□□ 1
COL3A1P02461 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC21.32■■□□□ 1
COL3A1P02461 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC21.32■■□□□ 1
COL3A1P02461 AL158212.4-201ENST00000624062 1286 ntBASIC21.32■■□□□ 1
COL3A1P02461 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC21.32■■□□□ 1
COL3A1P02461 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL3A1P02461 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC21.32■■□□□ 1
COL3A1P02461 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
COL3A1P02461 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
COL3A1P02461 COX20P2-201ENST00000452636 358 ntBASIC21.31■■□□□ 1
COL3A1P02461 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC21.31■■□□□ 1
COL3A1P02461 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
COL3A1P02461 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC21.31■■□□□ 1
COL3A1P02461 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 AC024909.3-201ENST00000611513 2257 ntBASIC21.31■■□□□ 1
COL3A1P02461 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC21.31■■□□□ 1
COL3A1P02461 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL3A1P02461 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
COL3A1P02461 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.3■■□□□ 1
COL3A1P02461 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC21.3■■□□□ 1
COL3A1P02461 AL603832.2-201ENST00000566195 2125 ntBASIC21.3■■□□□ 1
COL3A1P02461 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC21.3■■□□□ 1
COL3A1P02461 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC21.3■■□□□ 1
COL3A1P02461 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
COL3A1P02461 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC21.3■■□□□ 1
COL3A1P02461 GNAQP1-201ENST00000444815 1067 ntBASIC21.3■■□□□ 1
COL3A1P02461 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 SDHAP3-202ENST00000515467 728 ntBASIC21.3■■□□□ 1
COL3A1P02461 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC21.3■■□□□ 1
COL3A1P02461 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC21.3■■□□□ 1
COL3A1P02461 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC21.3■■□□□ 1
COL3A1P02461 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC21.3■■□□□ 1
COL3A1P02461 AC023310.3-201ENST00000557027 670 ntBASIC21.3■■□□□ 1
COL3A1P02461 AC100756.1-201ENST00000562736 682 ntBASIC21.3■■□□□ 1
COL3A1P02461 AC138749.3-201ENST00000567691 622 ntBASIC21.3■■□□□ 1
COL3A1P02461 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC21.3■■□□□ 1
COL3A1P02461 AC116165.1-201ENST00000611806 668 ntBASIC21.3■■□□□ 1
COL3A1P02461 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC21.3■■□□□ 1
COL3A1P02461 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC21.3■■□□□ 1
COL3A1P02461 AMT-233ENST00000636522 1620 ntTSL 2 BASIC21.3■■□□□ 1
COL3A1P02461 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.3■■□□□ 1
COL3A1P02461 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL3A1P02461 CDC14C-201ENST00000428251 1719 ntBASIC21.29■■□□□ 1
COL3A1P02461 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.29■■□□□ 1
COL3A1P02461 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 ELP6-209ENST00000446787 894 ntTSL 3 BASIC21.29■■□□□ 1
COL3A1P02461 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms